origdir = ../tarballs /home/sw/bin/buildPackage: line 17: .svn/deb-layout: No such file or directory Complete layout information: buildArea=/sw/debian-med/trunk/packages/ecell/build-area origDir=/sw/debian-med/trunk/packages/ecell/tarballs trunkDir=/sw/debian-med/trunk/packages/ecell/trunk trunkUrl=svn://svn.debian.org/svn/debian-med/trunk/packages/ecell/trunk UNRELEASED tag found - you don't want to release with it, do you? /sw/debian-med/trunk/packages/ecell/build-area/ecell-3.2.2 exists, removing it, as requested mergeWithUpstream mode detected, looking for /sw/debian-med/trunk/packages/ecell/tarballs/ecell_3.2.2.orig.tar.gz I: mergeWithUpstream property set, looking for upstream source tarball... tar --no-same-owner --no-same-permissions --extract --gzip --file /sw/debian-med/trunk/packages/ecell/tarballs/ecell-3.2.2.tar.gz --directory /sw/debian-med/trunk/packages/ecell/build-area/tmp-0.849826959501119 mv /sw/debian-med/trunk/packages/ecell/build-area/tmp-0.849826959501119/ecell-3.2.2 /sw/debian-med/trunk/packages/ecell/build-area/ecell-3.2.2 mkdir -p /sw/debian-med/trunk/packages/ecell/build-area/ecell-3.2.2/debian cp --parents -laf debian/ecell.dirs debian/control debian/ecell-doc.doc-base README.status debian/manpages debian/ecell-doc.dirs debian/copyright debian/changelog <6 more arguments> rm -rf /sw/debian-med/trunk/packages/ecell/build-area/tmp-0.849826959501119 chmod -R u+r+w+X,g+r-w+X,o+r-w+X -- /sw/debian-med/trunk/packages/ecell/build-area/ecell-3.2.2 /bin/sh -c pdebuild --buildresult /sw/packages/build-area -- --basetgz /var/cache/pbuilder/base-sid-amd64.tgz --architecture amd64 --distribution sid W: /home/sw/.pbuilderrc does not exist dpkg-buildpackage: source package ecell dpkg-buildpackage: source version 3.2.2-1 dpkg-buildpackage: source changed by DMPT dpkg-source --before-build ecell-3.2.2 fakeroot debian/rules clean dh_testdir dh_testroot rm -f build-arch-stamp build-indep-stamp #CONFIGURE-STAMP# # Add here commands to clean up after the build process. /usr/bin/make clean make[1]: Entering directory `/sw/debian-med/trunk/packages/ecell/build-area/ecell-3.2.2' make[1]: *** No rule to make target `clean'. Stop. make[1]: Leaving directory `/sw/debian-med/trunk/packages/ecell/build-area/ecell-3.2.2' make: [clean] Error 2 (ignored) /usr/bin/make -C doc clean make[1]: Entering directory `/sw/debian-med/trunk/packages/ecell/build-area/ecell-3.2.2/doc' make[1]: *** No rule to make target `clean'. Stop. make[1]: Leaving directory `/sw/debian-med/trunk/packages/ecell/build-area/ecell-3.2.2/doc' make: [clean] Error 2 (ignored) cp -f /usr/share/misc/config.sub config.sub cp -f /usr/share/misc/config.guess config.guess dh_clean ecell.1 install-sh mkinstalldirs missing py-compile ecell/libecs/libecs.so doc/users-manual/ecell3-users-manual.pdf doc/users-manual/ecell3-users-manual.pdf doc/refman/refman.pdf dh_clean: Compatibility levels before 5 are deprecated (level 4 in use) dpkg-source -b ecell-3.2.2 dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1) dpkg-source: info: using source format `1.0' dpkg-source: info: building ecell using existing ecell_3.2.2.orig.tar.gz dpkg-source: info: building ecell in ecell_3.2.2-1.diff.gz dpkg-source: warning: ignoring deletion of file missing dpkg-source: warning: ignoring deletion of file install-sh dpkg-source: warning: the diff modifies the following upstream files: README.status config.guess config.sub dpkg-source: info: use the '3.0 (quilt)' format to have separate and documented changes to upstream files, see dpkg-source(1) dpkg-source: info: building ecell in ecell_3.2.2-1.dsc dpkg-genchanges -S >../ecell_3.2.2-1_source.changes dpkg-genchanges: including full source code in upload dpkg-source --after-build ecell-3.2.2 dpkg-buildpackage: source only upload (original source is included) W: /home/sw/.pbuilderrc does not exist I: using fakeroot in build. I: Current time: Tue Mar 26 14:53:27 CET 2013 I: pbuilder-time-stamp: 1364306007 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/base-sid-amd64.tgz] I: creating local configuration I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /run/shm filesystem I: mounting /dev/pts filesystem I: policy-rc.d already exists I: Obtaining the cached apt archive contents I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 4.0.0), python-numpy, python-dev, python-gtk2, python-glade2, g++ (>= 3.3), libgsl0-dev, libboost-python-dev, automake, autoconf, libtool, python-gnome2, expect, doxygen, graphviz, docbook-utils, ghostscript, docbook-to-man dpkg-deb: building package `pbuilder-satisfydepends-dummy' in `/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 12010 files and directories currently installed.) Unpacking pbuilder-satisfydepends-dummy (from .../pbuilder-satisfydepends-dummy.deb) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 4.0.0); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-gtk2; however: Package python-gtk2 is not installed. pbuilder-satisfydepends-dummy depends on python-glade2; however: Package python-glade2 is not installed. pbuilder-satisfydepends-dummy depends on libgsl0-dev; however: Package libgsl0-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on automake; however: Package automake is not installed. pbuilder-satisfydepends-dummy depends on autoconf; however: Package autoco Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... The following NEW packages will be installed: adduser{a} autoconf{a} automake{a} autotools-dev{a} bsdmainutils{a} dbus dbus-x11{a} debhelper{a} desktop-file-utils{a} dmsetup{a} docbook{a} docbook-dsssl{a} docbook-to-man{a} docbook-utils{a} doxygen{a} ed{a} expect{a} file{a} fontconfig{a} fontconfig-config{a} gccxml{a} gconf-service gconf2 gconf2-common{a} gettext{a} gettext-base{a} ghostscript{a} gnome-mime-data graphviz{a} groff-base{a} gsfonts{a} gvfs{a} gvfs-common{a} gvfs-daemons{a} gvfs-libs{a} html2text{a} intltool-debian{a} jadetex{a} libart-2.0-2{a} libasound2{a} libasprintf-dev{a} libasprintf0c2{a} libatasmart4{a} libatk1.0-0{a} libatk1.0-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavahi-glib1 libblas3{a} libbluray1{a} libbonobo2-0{a} libbonobo2-common{a} libbonoboui2-0{a} libbonoboui2-common{a} libboost-python-dev{a} libboost-python1.49-dev{a} libboost-python1.49.0{a} libboost1.49-dev{a} libbsd0{a} libcairo2{a} libcanberra0{a} libcap2{a} libcdt4{a} libcgraph5{a} libcroco3{a} libcups2{a} libcupsimage2{a} libdatrie1{a} libdbus-1-3{a} libdbus-glib-1-2{a} libdevmapper-event1.02.1{a} libdevmapper1.02.1{a} libdrm2{a} libexpat1{a} libexpat1-dev{a} libfam0 libffi5{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgail18{a} libgconf-2-4 libgconf2-4{a} libgcrypt11{a} libgd2-noxpm{a} libgdk-pixbuf2.0-0{a} libgdk-pixbuf2.0-common{a} libgdu0{a} libgettextpo-dev{a} libgettextpo0{a} libgfortran3{a} libgl1-mesa-glx{a} libglade2-0{a} libglapi-mesa{a} libglib2.0-0{a} libgnome-keyring-common{a} libgnome-keyring0{a} libgnome2-0{a} libgnome2-common{a} libgnomecanvas2-0{a} libgnomecanvas2-common{a} libgnomeui-0{a} libgnomeui-common{a} libgnomevfs2-0{a} libgnomevfs2-common libgnutls26{a} libgpg-error0{a} libgraph4{a} libgraphite3{a} libgs9{a} libgs9-common{a} libgsl0-dev{a} libgsl0ldbl{a} libgssapi-krb5-2{a} libgtk2.0-0{a} libgtk2.0-common{a} libgudev-1.0-0{a} libgvc5{a} libgvpr1{a} libice6{a} libicu48{a} libidl0{a} libidn11{a} libijs-0.35{a} libjasper1{a} libjbig0 libjbig2dec0{a} libjpeg8{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms1{a} liblcms2-2{a} libldap-2.4-2{a} libltdl7{a} liblvm2app2.2{a} libmagic1{a} libogg0{a} libopenjpeg2{a} liborbit2{a} libosp5{a} libostyle1c2{a} libp11-kit0{a} libpango1.0-0{a} libpaper-utils{a} libpaper1{a} libparted0debian1{a} libpathplan4{a} libpcre3{a} libpipeline1{a} libpixman-1-0{a} libpng12-0{a} libpolkit-gobject-1-0{a} libpoppler19{a} libpopt0{a} libprocps0{a} libptexenc1{a} libpython2.7{a} libsasl2-2{a} libsgmls-perl{a} libsgutils2-2{a} libsigsegv2{a} libsm6{a} libsp1c2{a} libssl-dev{a} libssl1.0.0{a} libsystemd-login0{a} libtasn1-3{a} libtdb1{a} libthai-data{a} libthai0{a} libtiff4{a} libtool{a} libudev0{a} libunistring0{a} libvorbis0a{a} libvorbisfile3{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-glx0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxdot4{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxt6{a} libxtst6{a} libxv1{a} libxxf86dga1{a} libxxf86vm1{a} luatex{a} lynx{a} lynx-cur{a} m4{a} man-db{a} mime-support{a} openjade{a} po-debconf{a} poppler-data{a} procps{a} psmisc{a} python{a} python-cairo{a} python-dev{a} python-gconf{a} python-glade2{a} python-gnome2{a} python-gobject-2{a} python-gtk2{a} python-minimal{a} python-numpy{a} python-pyorbit{a} python-support{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} sgml-base{a} sgml-data{a} sgmlspl{a} shared-mime-info{a} sp{a} tcl8.5{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-common{a} texlive-doc-base{a} texlive-fonts-recommended{a} texlive-generic-recommended{a} texlive-latex-base{a} texlive-latex-recommended{a} tipa{a} ttf-dejavu-core{a} ttf-marvosym{a} udev{a} udisks{a} x11-common{a} x11-utils{a} xdg-utils{a} xml-core{a} zlib1g-dev{a} 0 packages upgraded, 263 newly installed, 0 to remove and 0 not upgraded. Need to get 9107 kB/194 MB of archives. After unpacking 613 MB will be used. Writing extended state information... Get: 1 http://sid-approx.alteholz.net/debian/ sid/main libatasmart4 amd64 0.19-2 [27.3 kB] Get: 2 http://sid-approx.alteholz.net/debian/ sid/main libavahi-glib1 amd64 0.6.31-2 [37.4 kB] Get: 3 http://sid-approx.alteholz.net/debian/ sid/main libdbus-glib-1-2 amd64 0.100.2-1 [203 kB] Get: 4 http://sid-approx.alteholz.net/debian/ sid/main dmsetup amd64 2:1.02.77-1 [69.4 kB] Get: 5 http://sid-approx.alteholz.net/debian/ sid/main libdevmapper1.02.1 amd64 2:1.02.77-1 [134 kB] Get: 6 http://sid-approx.alteholz.net/debian/ sid/main libdevmapper-event1.02.1 amd64 2:1.02.77-1 [33.5 kB] Get: 7 http://sid-approx.alteholz.net/debian/ sid/main liblvm2app2.2 amd64 2.02.98-1 [353 kB] Get: 8 http://sid-approx.alteholz.net/debian/ sid/main libsystemd-login0 amd64 44-11 [29.4 kB] Get: 9 http://sid-approx.alteholz.net/debian/ sid/main liblapack3 amd64 3.4.1+dfsg-1 [5036 kB] Get: 10 http://sid-approx.alteholz.net/debian/ sid/main python-gobject-2 amd64 2.28.6-11 [552 kB] Get: 11 http://sid-approx.alteholz.net/debian/ sid/main python-numpy amd64 1:1.6.2-1.2 [2632 kB] Fetched 9107 kB in 56s (161 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:amd64. (Reading database ... 12010 files and directories currently installed.) Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.2-2_amd64.deb) ... Selecting previously unselected package libpopt0:amd64. Unpacking libpopt0:amd64 (from .../libpopt0_1.16-7_amd64.deb) ... Selecting previously unselected package libprocps0:amd64. Unpacking libprocps0:amd64 (from .../libprocps0_1%3a3.3.4-2_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2_amd64.deb) ... Selecting previously unselected package libudev0:amd64. Unpacking libudev0:amd64 (from .../libudev0_175-7.1_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-1_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.4_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.3-3_amd64.deb) ... Selecting previously unselected package procps. Unpacking procps (from .../procps_1%3a3.3.4-2_amd64.deb) ... Selecting previously unselected package udev. Unpacking udev (from .../udev_175-7.1_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-10_amd64.deb) ... Selecting previously unselected package libcap2:amd64. Unpacking libcap2:amd64 (from .../libcap2_1%3a2.22-1.2_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3.1_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.0-5_amd64.deb) ... Selecting previously unselected package libp11-kit0:amd64. Unpacking libp11-kit0:amd64 (from .../libp11-kit0_0.12-3_amd64.deb) ... Selecting previously unselected package libtasn1-3:amd64. 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Selecting previously unselected package libgnome2-0. Unpacking libgnome2-0 (from .../libgnome2-0_2.32.1-2_amd64.deb) ... Selecting previously unselected package libgnomecanvas2-common. Unpacking libgnomecanvas2-common (from .../libgnomecanvas2-common_2.30.3-1.2_all.deb) ... Selecting previously unselected package libgnomecanvas2-0. Unpacking libgnomecanvas2-0 (from .../libgnomecanvas2-0_2.30.3-1.2_amd64.deb) ... Selecting previously unselected package libbonoboui2-common. Unpacking libbonoboui2-common (from .../libbonoboui2-common_2.24.3-1_all.deb) ... Selecting previously unselected package libbonoboui2-0. Unpacking libbonoboui2-0 (from .../libbonoboui2-0_2.24.3-1_amd64.deb) ... Selecting previously unselected package libboost1.49-dev. Unpacking libboost1.49-dev (from .../libboost1.49-dev_1.49.0-3.2_amd64.deb) ... Selecting previously unselected package libboost-python1.49.0. Unpacking libboost-python1.49.0 (from .../libboost-python1.49.0_1.49.0-3.2_amd64.deb) ... 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Unpacking libboost-python-dev (from .../libboost-python-dev_1.49.0.1_amd64.deb) ... Selecting previously unselected package libgnomeui-common. Unpacking libgnomeui-common (from .../libgnomeui-common_2.24.5-2_all.deb) ... Selecting previously unselected package libgnomeui-0. Unpacking libgnomeui-0 (from .../libgnomeui-0_2.24.5-2_amd64.deb) ... Selecting previously unselected package libgsl0ldbl. Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.15+dfsg.2-2_amd64.deb) ... Selecting previously unselected package libgsl0-dev. Unpacking libgsl0-dev (from .../libgsl0-dev_1.15+dfsg.2-2_amd64.deb) ... Selecting previously unselected package liblapack3. Unpacking liblapack3 (from .../liblapack3_3.4.1+dfsg-1_amd64.deb) ... Selecting previously unselected package libtool. Unpacking libtool (from .../libtool_2.4.2-1.2_amd64.deb) ... Selecting previously unselected package python-cairo. Unpacking python-cairo (from .../python-cairo_1.8.8-1+b2_amd64.deb) ... Selecting previously unselected package python-gobject-2. Unpacking python-gobject-2 (from .../python-gobject-2_2.28.6-11_amd64.deb) ... Selecting previously unselected package python-gconf. Unpacking python-gconf (from .../python-gconf_2.28.1+dfsg-1_amd64.deb) ... Selecting previously unselected package python-numpy. Unpacking python-numpy (from .../python-numpy_1%3a1.6.2-1.2_amd64.deb) ... Selecting previously unselected package python-gtk2. Unpacking python-gtk2 (from .../python-gtk2_2.24.0-3+b1_amd64.deb) ... Selecting previously unselected package python-glade2. Unpacking python-glade2 (from .../python-glade2_2.24.0-3+b1_amd64.deb) ... Selecting previously unselected package python-pyorbit. Unpacking python-pyorbit (from .../python-pyorbit_2.24.0-6+b1_amd64.deb) ... Selecting previously unselected package python-gnome2. Unpacking python-gnome2 (from .../python-gnome2_2.28.1+dfsg-1_amd64.deb) ... Setting up libpipeline1:amd64 (1.2.2-2) ... Setting up libpopt0:amd64 (1.16-7) ... Setting up libprocps0:amd64 (1:3.3.4-2) ... Setting up libssl1.0.0:amd64 (1.0.1e-2) ... Setting up libudev0:amd64 (175-7.1) ... Setting up groff-base (1.22.2-1) ... Setting up bsdmainutils (9.0.4) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.3-3) ... Building database of manual pages ... Setting up procps (1:3.3.4-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode invoke-rc.d: policy-rc.d denied execution of start. Setting up udev (175-7.1) ... A chroot environment has been detected, udev not started. Setting up libasprintf0c2:amd64 (0.18.1.1-10) ... Setting up libcap2:amd64 (1:2.22-1.2) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-5) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2) ... Setting up libgnutls26:amd64 (2.12.20-5) ... Setting up libkeyutils1:amd64 (1.5.5-6) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-4+nmu1) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-4+nmu1) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-4+nmu1) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-4+nmu1) ... Setting up libidn11:amd64 (1.25-2) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-6) ... Setting up libldap-2.4-2:amd64 (2.4.31-1) ... Setting up libmagic1:amd64 (1:5.11-2.1) ... Setting up libpcre3:amd64 (1:8.31-2) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7+nmu1) ... Setting up libart-2.0-2:amd64 (2.3.21-2) ... Setting up libasound2:amd64 (1.0.25-4) ... Setting up libatasmart4:amd64 (0.19-2) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libglib2.0-0:amd64 (2.33.12+really2.32.4-5) ... No schema files found: doing nothing. Setting up libatk1.0-data (2.4.0-2) ... Setting up libatk1.0-0:amd64 (2.4.0-2) ... Setting up libavahi-common-data:amd64 (0.6.31-2) ... Setting up libavahi-common3:amd64 (0.6.31-2) ... Setting up libdbus-1-3:amd64 (1.6.8-1) ... Setting up libavahi-client3:amd64 (0.6.31-2) ... Setting up libavahi-glib1:amd64 (0.6.31-2) ... Setting up libbluray1:amd64 (1:0.2.2-1) ... Setting up libbsd0:amd64 (0.4.2-1) ... Setting up libexpat1:amd64 (2.1.0-1) ... Setting up libfreetype6:amd64 (2.4.9-1.1) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libpixman-1-0:amd64 (0.26.0-4) ... Setting up libpng12-0:amd64 (1.2.49-3) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2) ... Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:amd64 (2:1.5.0-1) ... Setting up libxcb-render0:amd64 (1.8.1-2) ... Setting up libxcb-shm0:amd64 (1.8.1-2) ... Setting up libxrender1:amd64 (1:0.9.7-1) ... Setting up libcairo2:amd64 (1.12.2-3) ... Setting up libltdl7:amd64 (2.4.2-1.2) ... Setting up libogg0:amd64 (1.3.0-4) ... Setting up libtdb1:amd64 (1.2.10-2) ... Setting up libvorbis0a:amd64 (1.3.2-1.3) ... Setting up libvorbisfile3:amd64 (1.3.2-1.3) ... Setting up libcanberra0:amd64 (0.28-6) ... Setting up libcroco3:amd64 (0.6.6-2) ... Setting up libcups2:amd64 (1.5.3-5) ... Setting up libjpeg8:amd64 (8d-1) ... Setting up libjbig0:amd64 (2.0-2) ... Setting up libtiff4:amd64 (3.9.6-11) ... Setting up libcupsimage2:amd64 (1.5.3-5) ... Setting up libdatrie1:amd64 (0.2.5-3) ... Setting up libdbus-glib-1-2:amd64 (0.100.2-1) ... Setting up libdrm2:amd64 (2.4.40-1~deb7u2) ... Setting up libfontenc1:amd64 (1:1.1.1-1) ... Setting up libjasper1:amd64 (1.900.1-14) ... Setting up libgdk-pixbuf2.0-common (2.26.1-1) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.26.1-1) ... Setting up libthai-data (0.1.18-2) ... Setting up libthai0:amd64 (0.1.18-2) ... Setting up libxft2:amd64 (2.3.1-1) ... Setting up fontconfig (2.9.0-7.1) ... Regenerating fonts cache... done. Setting up libpango1.0-0:amd64 (1.30.0-1) ... Setting up libxcomposite1:amd64 (1:0.4.3-2) ... Setting up libxfixes3:amd64 (1:5.0-4) ... Setting up libxdamage1:amd64 (1:1.1.3-2) ... Setting up libgtk2.0-common (2.24.10-2) ... Setting up libxcursor1:amd64 (1:1.1.13-1) ... Setting up libxext6:amd64 (2:1.3.1-2) ... Setting up libxi6:amd64 (2:1.6.1-1) ... Setting up libxinerama1:amd64 (2:1.1.2-1) ... Setting up libxrandr2:amd64 (2:1.3.2-2) ... Setting up shared-mime-info (1.0-1+b1) ... Setting up libgtk2.0-0:amd64 (2.24.10-2) ... Setting up libgail18:amd64 (2.24.10-2) ... Setting up gconf2-common (3.2.5-1+build1) ... Creating config file /etc/gconf/2/path with new version Setting up libgconf-2-4:amd64 (3.2.5-1+build1) ... Setting up libgd2-noxpm:amd64 (2.0.36~rc1~dfsg-6.1) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libgettextpo0:amd64 (0.18.1.1-10) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libglapi-mesa:amd64 (8.0.5-4) ... Setting up libx11-xcb1:amd64 (2:1.5.0-1) ... Setting up libxcb-glx0:amd64 (1.8.1-2) ... Setting up libxxf86vm1:amd64 (1:1.1.2-1) ... Setting up libgl1-mesa-glx:amd64 (8.0.5-4) ... Setting up libgnome-keyring-common (3.4.1-1) ... Setting up libgnome-keyring0:amd64 (3.4.1-1) ... Setting up libgudev-1.0-0:amd64 (175-7.1) ... Setting up x11-common (1:7.7+2) ... Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libicu48:amd64 (4.8.1.1-12) ... Setting up liblcms1:amd64 (1.19.dfsg-1.2) ... Setting up liblcms2-2:amd64 (2.2+git20110628-2.2) ... Setting up libopenjpeg2:amd64 (1.3+dfsg-4.6) ... Setting up libpaper1:amd64 (1.1.24+nmu2) ... Creating config file /etc/papersize with new version Setting up libpolkit-gobject-1-0:amd64 (0.105-3) ... Setting up libpoppler19:amd64 (0.18.4-6) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libxt6:amd64 (1:1.1.3-1) ... Setting up libxmu6:amd64 (2:1.1.1-1) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libxaw7:amd64 (2:1.0.10-2) ... Setting up libxcb-shape0:amd64 (1.8.1-2) ... Setting up libxmuu1:amd64 (2:1.1.1-1) ... Setting up libxtst6:amd64 (2:1.2.1-1) ... Setting up libxv1:amd64 (2:1.0.7-1) ... Setting up libxxf86dga1:amd64 (2:1.1.3-2) ... Setting up tex-common (3.15) ... Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up libkpathsea6 (2012.20120628-4) ... Setting up luatex (0.70.1.20120524-3) ... texlive-base is not ready, cannot create formats Setting up poppler-data (0.4.6-3) ... Setting up sgml-base (1.26+nmu4) ... Setting up libsystemd-login0:amd64 (44-11) ... Setting up adduser (3.113+nmu3) ... Setting up file (1:5.11-2.1) ... Setting up gettext-base (0.18.1.1-10) ... Setting up libsigsegv2 (2.9-4) ... Setting up m4 (1.4.16-5) ... Setting up mime-support (3.52-2) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up python2.7-minimal (2.7.3-8) ... Setting up python2.7 (2.7.3-8) ... Setting up python-minimal (2.7.3-4) ... Setting up python (2.7.3-4) ... Setting up python-support (1.0.15) ... Setting up autoconf (2.69-1) ... Setting up autotools-dev (20120608.1) ... Setting up automake (1:1.11.6-1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode Setting up dbus (1.6.8-1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up dbus-x11 (1.6.8-1) ... Setting up html2text (1.3.2a-15) ... Setting up libasprintf-dev:amd64 (0.18.1.1-10) ... Setting up libgettextpo-dev:amd64 (0.18.1.1-10) ... Setting up gettext (0.18.1.1-10) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120909) ... Setting up desktop-file-utils (0.20-0.1) ... Setting up xml-core (0.13+nmu2) ... Setting up libosp5 (1.5.2-10) ... Setting up libostyle1c2 (1.4devel1-20.1+b1) ... Setting up openjade (1.4devel1-20.1+b1) ... Setting up libsp1c2 (1.3.4-1.2.1-47.1+b1) ... Setting up sp (1.3.4-1.2.1-47.1+b1) ... Setting up libgraphite3 (1:2.3.1-0.2) ... Setting up libijs-0.35 (0.35-8) ... Setting up libjbig2dec0 (0.11+20120125-1) ... Setting up libgs9-common (9.05~dfsg-6.3) ... Setting up libgs9 (9.05~dfsg-6.3) ... Setting up libptexenc1 (2012.20120628-4) ... Setting up texlive-common (2012.20120611-5) ... Setting up ed (1.6-2) ... Setting up texlive-binaries (2012.20120628-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Building format(s) --refresh. This may take some time... done. Setting up texlive-doc-base (2012.20120611-1) ... Setting up xdg-utils (1.1.0~rc1+git20111210-7) ... Setting up libpaper-utils (1.1.24+nmu2) ... Setting up ttf-marvosym (0.1+dfsg-2) ... Setting up lynx-cur (2.8.8dev.15-2) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up lynx (2.8.8dev.15-2) ... Setting up libsgmls-perl (1.03ii-32) ... Setting up sgmlspl (1.03ii-32) ... Setting up doxygen (1.8.1.2-2) ... Setting up tcl8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode Setting up expect (5.45-2) ... Setting up gccxml (0.9.0+cvs20120420-4) ... Setting up gconf-service (3.2.5-1+build1) ... Setting up psmisc (22.20-1) ... Setting up gconf2 (3.2.5-1+build1) ... update-alternatives: using /usr/bin/gconftool-2 to provide /usr/bin/gconftool (gconftool) in auto mode Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2) ... Setting up ghostscript (9.05~dfsg-6.3) ... Setting up gnome-mime-data (2.18.0-1) ... Setting up libcdt4 (2.26.3-14) ... Setting up libcgraph5 (2.26.3-14) ... Setting up libgraph4 (2.26.3-14) ... Setting up libpathplan4 (2.26.3-14) ... Setting up libxdot4 (2.26.3-14) ... Setting up libgvc5 (2.26.3-14) ... Setting up libgvpr1 (2.26.3-14) ... Setting up graphviz (2.26.3-14) ... Setting up libsgutils2-2 (1.33-1) ... Setting up x11-utils (7.7~1) ... Setting up gvfs-common (1.12.3-4) ... Setting up gvfs-libs:amd64 (1.12.3-4) ... Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libbonobo2-common (2.24.3-1) ... Setting up libidl0 (0.8.14-0.2) ... Setting up liborbit2 (1:2.14.19-0.1) ... Setting up libbonobo2-0 (2.24.3-1) ... Setting up libgconf2-4:amd64 (3.2.5-1+build1) ... Setting up libglade2-0 (1:2.6.4-1) ... Setting up libfam0 (2.7.0-17) ... Setting up libgnomevfs2-common (1:2.24.4-1) ... Setting up libgnomevfs2-0 (1:2.24.4-1) ... Setting up libgnome2-common (2.32.1-2) ... Setting up libgnomecanvas2-common (2.30.3-1.2) ... Setting up libgnomecanvas2-0 (2.30.3-1.2) ... Setting up libbonoboui2-common (2.24.3-1) ... Setting up libboost1.49-dev (1.49.0-3.2) ... Setting up libboost-python1.49.0 (1.49.0-3.2) ... Setting up libpython2.7 (2.7.3-8) ... Setting up libexpat1-dev (2.1.0-1) ... Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13) ... Setting up libssl-dev (1.0.1e-2) ... Setting up python2.7-dev (2.7.3-8) ... Setting up python-dev (2.7.3-4) ... Setting up libboost-python1.49-dev (1.49.0-3.2) ... Setting up libboost-python-dev (1.49.0.1) ... Setting up libgnomeui-common (2.24.5-2) ... Setting up libgsl0ldbl (1.15+dfsg.2-2) ... Setting up libgsl0-dev (1.15+dfsg.2-2) ... Setting up liblapack3 (3.4.1+dfsg-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libtool (2.4.2-1.2) ... Setting up python-cairo (1.8.8-1+b2) ... Setting up python-gobject-2 (2.28.6-11) ... Setting up python-gconf (2.28.1+dfsg-1) ... Setting up python-numpy (1:1.6.2-1.2) ... Setting up python-gtk2 (2.24.0-3+b1) ... Setting up python-glade2 (2.24.0-3+b1) ... Setting up python-pyorbit (2.24.0-6+b1) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-base (2012.20120611-5) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Processing triggers for tex-common ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-generic-recommended (2012.20120611-5) ... Setting up texlive-latex-base (2012.20120611-5) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Setting up texlive-fonts-recommended (2012.20120611-5) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-recommended (2012.20120611-5) ... Setting up tipa (2:1.3-19) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up jadetex (3.13-14) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/40jadetex.cnf. This may take some time... done. Processing triggers for sgml-base ... Setting up sgml-data (2.0.8) ... Processing triggers for sgml-base ... Setting up docbook (4.5-5.1) ... Processing triggers for sgml-base ... Setting up docbook-dsssl (1.79-7) ... Setting up docbook-to-man (1:2.0.0-31) ... Processing triggers for sgml-base ... Setting up docbook-utils (0.6.14-3) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.77-1) ... Setting up libdevmapper-event1.02.1:amd64 (2:1.02.77-1) ... Setting up liblvm2app2.2:amd64 (2.02.98-1) ... Setting up libparted0debian1:amd64 (2.3-12) ... Setting up udisks (1.0.4-7) ... Setting up libgdu0 (3.0.2-3) ... Setting up gvfs-daemons (1.12.3-4) ... Setting up gvfs:amd64 (1.12.3-4) ... Setting up libgnome2-0 (2.32.1-2) ... Setting up libbonoboui2-0 (2.24.3-1) ... Setting up libgnomeui-0 (2.24.5-2) ... Setting up python-gnome2 (2.28.1+dfsg-1) ... Setting up dmsetup (2:1.02.77-1) ... Processing triggers for python-support ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: fakeroot debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/109 kB of archives. After this operation, 325 kB of additional disk space will be used. Selecting previously unselected package fakeroot. (Reading database ... 41817 files and directories currently installed.) Unpacking fakeroot (from .../fakeroot_1.18.4-2_amd64.deb) ... Processing triggers for man-db ... Setting up fakeroot (1.18.4-2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode I: Copying back the cached apt archive contents I: new cache content libdbus-glib-1-2_0.100.2-1_amd64.deb added I: new cache content liblapack3_3.4.1+dfsg-1_amd64.deb added I: new cache content liblvm2app2.2_2.02.98-1_amd64.deb added I: new cache content libatasmart4_0.19-2_amd64.deb added I: new cache content libsystemd-login0_44-11_amd64.deb added I: new cache content python-numpy_1%3a1.6.2-1.2_amd64.deb added I: new cache content libdevmapper-event1.02.1_2%3a1.02.77-1_amd64.deb added I: new cache content dmsetup_2%3a1.02.77-1_amd64.deb added I: new cache content libavahi-glib1_0.6.31-2_amd64.deb added I: new cache content libdevmapper1.02.1_2%3a1.02.77-1_amd64.deb added I: new cache content python-gobject-2_2.28.6-11_amd64.deb added I: Copying source file I: copying [../ecell_3.2.2-1.dsc] I: copying [../ecell_3.2.2.orig.tar.gz] I: copying [../ecell_3.2.2-1.diff.gz] I: Extracting source dpkg-source: warning: extracting unsigned source package (ecell_3.2.2-1.dsc) dpkg-source: info: extracting ecell in ecell-3.2.2 dpkg-source: info: unpacking ecell_3.2.2.orig.tar.gz dpkg-source: info: applying ecell_3.2.2-1.diff.gz dpkg-source: info: upstream files that have been modified: ecell-3.2.2/README.status ecell-3.2.2/config.guess ecell-3.2.2/config.sub I: Building the package I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" dpkg-buildpackage -us -uc -rfakeroot dpkg-buildpackage: source package ecell dpkg-buildpackage: source version 3.2.2-1 dpkg-buildpackage: source changed by DMPT dpkg-source --before-build ecell-3.2.2 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh_testdir dh_testroot rm -f build-arch-stamp build-indep-stamp #CONFIGURE-STAMP# # Add here commands to clean up after the build process. /usr/bin/make clean make[1]: Entering directory `/tmp/buildd/ecell-3.2.2' make[1]: *** No rule to make target `clean'. Stop. make[1]: Leaving directory `/tmp/buildd/ecell-3.2.2' make: [clean] Error 2 (ignored) /usr/bin/make -C doc clean make[1]: Entering directory `/tmp/buildd/ecell-3.2.2/doc' make[1]: *** No rule to make target `clean'. Stop. make[1]: Leaving directory `/tmp/buildd/ecell-3.2.2/doc' make: [clean] Error 2 (ignored) cp -f /usr/share/misc/config.sub config.sub cp -f /usr/share/misc/config.guess config.guess dh_clean ecell.1 install-sh mkinstalldirs missing py-compile ecell/libecs/libecs.so doc/users-manual/ecell3-users-manual.pdf doc/users-manual/ecell3-users-manual.pdf doc/refman/refman.pdf dh_clean: Compatibility levels before 5 are deprecated (level 4 in use) dpkg-source -b ecell-3.2.2 dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1) dpkg-source: info: using source format `1.0' dpkg-source: info: building ecell using existing ecell_3.2.2.orig.tar.gz dpkg-source: info: building ecell in ecell_3.2.2-1.diff.gz dpkg-source: warning: ignoring deletion of file install-sh dpkg-source: warning: ignoring deletion of file missing dpkg-source: warning: the diff modifies the following upstream files: README.status config.guess config.sub dpkg-source: info: use the '3.0 (quilt)' format to have separate and documented changes to upstream files, see dpkg-source(1) dpkg-source: info: building ecell in ecell_3.2.2-1.dsc debian/rules build make: *** No rule to make target `ecell.sgml', needed by `ecell.1'. Stop. dpkg-buildpackage: error: debian/rules build gave error exit status 2 E: Failed autobuilding of package I: unmounting dev/pts filesystem I: unmounting run/shm filesystem I: unmounting proc filesystem I: cleaning the build env I: removing directory /var/cache/pbuilder/build//722 and its subdirectories build command failed in /sw/debian-med/trunk/packages/ecell/build-area/ecell-3.2.2 Aborting. W: build directory not purged!