P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/lisblk N: N: The source tarball contains a prebuilt ELF object. They are usually left N: by mistake when generating the tarball by not cleaning the source N: directory first. You may want to report this as an upstream bug, in case N: there is no sign that this was intended. N: N: Severity: pedantic, Certainty: certain N: N: Check: cruft, Type: source N: P: blimps source: source-contains-prebuilt-binary bin/Linux/LAMA_search P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/uextract P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/motmisc.o P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/blimps P: blimps source: source-contains-prebuilt-binary bin/Linux/coduse P: blimps source: source-contains-prebuilt-binary bin/Linux/blosum P: blimps source: source-contains-prebuilt-binary bin/Linux/addseqs P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/makeblockmap P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/blk2mot P: blimps source: source-contains-prebuilt-binary bin/Linux/pssmdist P: blimps source: source-contains-prebuilt-binary bin/Linux/LAMA P: blimps source: source-contains-prebuilt-binary bin/Linux/htmlize-codehop P: blimps source: source-contains-prebuilt-binary bin/Linux/uextract P: blimps source: source-contains-prebuilt-binary bin/Linux/blk2mot P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/lislis P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/motomat P: blimps source: source-contains-prebuilt-binary bin/Linux/getseq P: blimps source: source-contains-prebuilt-binary bin/Linux/blocks_search P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/codehop P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/cobbler P: blimps source: source-contains-prebuilt-binary bin/Linux/pssmBL P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/blk2lis P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/makelis P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/addseqs P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/bldist P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/interpro P: blimps source: source-contains-prebuilt-binary bin/Linux/narrow P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/htmlize-codehop P: blimps source: source-contains-prebuilt-binary bin/Linux/interpro P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/mablock P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/pssmdist P: blimps source: source-contains-prebuilt-binary bin/Linux/blk2slx P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/getblock P: blimps source: source-contains-prebuilt-binary bin/Linux/motifj P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/getseq P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/blksort P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/multimat P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/retblock P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/show_aligned_blocks P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/prints2blocks P: blimps source: source-contains-prebuilt-binary bin/Linux/blastdat P: blimps source: source-contains-prebuilt-binary bin/Linux/blk2pssm P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/mablock P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/blk2pssm P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/addseqs P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/motifj P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/blocks_search P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/block_vis P: blimps source: source-contains-prebuilt-binary bin/Linux/lisblk P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/bldist P: blimps source: source-contains-prebuilt-binary bin/Linux/motomat P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/format_block P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/blk2pssm P: blimps source: source-contains-prebuilt-binary bin/Linux/htmlize-LAMA P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/makelis P: blimps source: source-contains-prebuilt-binary bin/Linux/prints2blocks P: blimps source: source-contains-prebuilt-binary bin/Linux/codehop P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/interpro P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/makelogob P: blimps source: source-contains-prebuilt-binary bin/Linux/rank_matrix P: blimps source: source-contains-prebuilt-binary bin/Linux/block_vis P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/cobbler P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/format_block P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/blosum P: blimps source: source-contains-prebuilt-binary bin/Linux/blksort P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/pssmdist P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/blalign P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/matrix_logob P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/getblock P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/LAMA_search P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/motomat P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/retblock P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/LAMA P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/LAMA P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/fastaseqs P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/protxblk P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/blocks_search P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/coduse P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/codehop P: blimps source: source-contains-prebuilt-binary bin/Linux/matrix_logob P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/htmlize-LAMA P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/block_vis P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/find_biassed_blocks P: blimps source: source-contains-prebuilt-binary bin/Linux/oligo_melt P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/oligo_melt P: blimps source: source-contains-prebuilt-binary bin/Linux/mablock P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/blweight P: blimps source: source-contains-prebuilt-binary bin/Linux/papssm P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/pssmBL P: blimps source: source-contains-prebuilt-binary bin/Linux/format_block P: blimps source: source-contains-prebuilt-binary bin/Linux/bldist P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/blk2slx P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/blkprob P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/pssmBL P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/rank_matrix P: blimps source: source-contains-prebuilt-binary bin/Linux/makelogob P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/blalign P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/prints2blocks P: blimps source: source-contains-prebuilt-binary bin/Linux/makelis P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/lisblk P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/fastaseqs P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/LAMA_search P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/papssm P: blimps source: source-contains-prebuilt-binary bin/Linux/find_biassed_blocks P: blimps source: source-contains-prebuilt-binary bin/Linux/blimps P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/motifj P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/htmlize-LAMA P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/blastdat P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/blkprob P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/biassed_blocks_finder P: blimps source: source-contains-prebuilt-binary bin/Linux/blalign P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/find_biassed_blocks P: blimps source: source-contains-prebuilt-binary bin/Linux/blweight P: blimps source: source-contains-prebuilt-binary bin/Linux/blkprob P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/blweight P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/rank_matrix P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/blastdat P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/blk2slx P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/blk2mot P: blimps source: source-contains-prebuilt-binary bin/Linux/show_aligned_blocks P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/coduse P: blimps source: source-contains-prebuilt-binary bin/Linux/makeblockmap P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/makelogob P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/biassed_blocks_finder P: blimps source: source-contains-prebuilt-binary bin/Linux/fastaseqs P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/makeblockmap P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/htmlize-codehop P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/uextract P: blimps source: source-contains-prebuilt-binary bin/Linux/retblock P: blimps source: source-contains-prebuilt-binary bin/Linux/cobbler P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/blimps P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/blosum P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/papssm P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/narrow P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/show_aligned_blocks P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/narrow P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/getseq P: blimps source: source-contains-prebuilt-binary bin/Linux/multimat P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/blksort P: blimps source: source-contains-prebuilt-binary bin/Linux/getblock P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/matrix_logob P: blimps source: source-contains-prebuilt-binary bin/Sun_intel/multimat P: blimps source: source-contains-prebuilt-binary bin/Linux/biassed_blocks_finder P: blimps source: source-contains-prebuilt-binary bin/Sun_sparc/oligo_melt P: blimps-examples: no-upstream-changelog N: N: The package does not install an upstream changelog file. If upstream N: provides a changelog, it should be accessible as N: /usr/share/doc//changelog.gz. N: N: It's currently unclear how best to handle multiple binary packages from N: the same source. Some maintainers put a copy of the upstream changelog N: in each package, but it can be quite long. Some include it in one N: package and add symlinks to the other packages, but this requires there N: be dependencies between the packages. Some only include it in a N: "central" binary package and omit it from more ancillary packages. N: N: Refer to Debian Policy Manual section 12.7 (Changelog files) for N: details. N: N: Severity: pedantic, Certainty: wild-guess N: N: Check: changelog-file, Type: binary N: X: blimps-examples: duplicate-files usr/share/doc/blimps-examples/examples/processor/distribution/fasta.in.seqs usr/share/doc/blimps-examples/examples/processor/distribution/stockholm.in.seqs N: N: The package ships the two (or more) files with the exact same contents. N: N: Note: empty files are exempt from this check. N: N: Severity: minor, Certainty: possible N: N: Check: duplicate-files, Type: binary N: N: This tag is marked experimental, which means that the code that N: generates it is not as well-tested as the rest of Lintian and might N: still give surprising results. Feel free to ignore experimental tags N: that do not seem to make sense, though of course bug reports are always N: welcomed. N: X: blimps-examples: package-contains-no-arch-dependent-files N: N: The package is not marked architecture all, but all the files it ships N: are installed in /usr/share. N: N: Most likely this package should be marked architecture all, but there is N: a chance that the package is missing files. N: N: Refer to Debian Policy Manual section 5.6.8 (Architecture) for details. N: N: Severity: minor, Certainty: possible N: N: Check: files, Type: binary, udeb N: N: This tag is marked experimental, which means that the code that N: generates it is not as well-tested as the rest of Lintian and might N: still give surprising results. Feel free to ignore experimental tags N: that do not seem to make sense, though of course bug reports are always N: welcomed. N: W: libblimps3: hardening-no-relro usr/lib/libblimps.so.3.0.0 N: N: This package provides an ELF binary that lacks the "read-only N: relocation" link flag. This package was likely not built with the N: default Debian compiler flags defined by dpkg-buildflags. If built using N: dpkg-buildflags directly, be sure to import LDFLAGS. N: N: Refer to http://wiki.debian.org/Hardening for details. N: N: Severity: normal, Certainty: certain N: N: Check: binaries, Type: binary, udeb N: W: libblimps3: hardening-no-fortify-functions usr/lib/libblimps.so.3.0.0 N: N: This package provides an ELF binary that lacks the use of fortified libc N: functions. Either there are no potentially unfortified functions called N: by any routines, all unfortified calls have already been fully validated N: at compile-time, or the package was not built with the default Debian N: compiler flags defined by dpkg-buildflags. If built using N: dpkg-buildflags directly, be sure to import CPPFLAGS. N: N: NB: Due to false-positives, Lintian ignores some unprotected functions N: (e.g. memcpy). N: N: Refer to http://wiki.debian.org/Hardening and N: http://bugs.debian.org/673112 for details. N: N: Severity: normal, Certainty: possible N: N: Check: binaries, Type: binary, udeb N: P: libblimps3: no-upstream-changelog X: libblimps3: shlib-calls-exit usr/lib/libblimps.so.3.0.0 N: N: The listed shared library calls the C library exit() or _exit() N: functions. N: N: In the case of an error, the library should instead return an N: appropriate error code to the calling program which can then determine N: how to handle the error, including performing any required clean-up. N: N: In most cases, removing the call should be discussed with upstream, N: particularly as it may produce an ABI change. N: N: Severity: wishlist, Certainty: possible N: N: Check: shared-libs, Type: binary, udeb N: N: This tag is marked experimental, which means that the code that N: generates it is not as well-tested as the rest of Lintian and might N: still give surprising results. Feel free to ignore experimental tags N: that do not seem to make sense, though of course bug reports are always N: welcomed. N: I: libblimps3: no-symbols-control-file usr/lib/libblimps.so.3.0.0 N: N: Although the package includes a shared library, the package does not N: have a symbols control file. N: N: dpkg can use symbols files in order to generate more accurate library N: dependencies for applications, based on the symbols from the library N: that are actually used by the application. N: N: Refer to the dpkg-gensymbols(1) manual page and N: http://wiki.debian.org/UsingSymbolsFiles for details. N: N: Severity: wishlist, Certainty: certain N: N: Check: shared-libs, Type: binary, udeb N: P: libblimps3-dev: no-upstream-changelog W: blimps-utils: hardening-no-relro usr/bin/fastaseqs W: blimps-utils: hardening-no-fortify-functions usr/bin/fastaseqs P: blimps-utils: no-upstream-changelog X: blimps-utils: duplicate-files usr/share/doc/blimps-utils/html/biased_blocks.html usr/share/doc/blimps-utils/html/biassed_blocks.html W: blimps-utils: zero-byte-file-in-doc-directory usr/share/doc/blimps-utils/html/bin/marks N: N: The documentation directory for this package contains an empty file. N: This is often due to installing an upstream NEWS or README file without N: realizing it's empty and hence not useful. N: N: Files in the examples subdirectory are excluded from this check, but N: there are some cases where empty files are legitimate parts of the N: documentation without being examples. In those cases, please add an N: override. N: N: Severity: normal, Certainty: possible N: N: Check: files, Type: binary, udeb N: W: blimps-utils: zero-byte-file-in-doc-directory usr/share/doc/blimps-utils/html/bin/wave