P: biomaj-watcher: no-upstream-changelog
N: 
N:    The package does not install an upstream changelog file. If upstream
N:    provides a changelog, it should be accessible as
N:    /usr/share/doc/<pkg>/changelog.gz.
N:    
N:    It's currently unclear how best to handle multiple binary packages from
N:    the same source. Some maintainers put a copy of the upstream changelog
N:    in each package, but it can be quite long. Some include it in one
N:    package and add symlinks to the other packages, but this requires there
N:    be dependencies between the packages. Some only include it in a
N:    "central" binary package and omit it from more ancillary packages.
N:    
N:    Refer to Debian Policy Manual section 12.7 (Changelog files) for
N:    details.
N:    
N:    Severity: pedantic, Certainty: wild-guess
N:    
N:    Check: changelog-file, Type: binary
N: 
W: biomaj-watcher: embedded-javascript-library usr/share/java/webapps/biomaj-watcher/resources/flash/swfobject.js
N: 
N:    This package contains an embedded copy of JavaScript libraries that are
N:    now available in their own packages (for example, JQuery, Prototype,
N:    Mochikit or "Cropper"). Please depend on the appropriate package and
N:    symlink the library into the appropriate location.
N:    
N:    Refer to Debian Policy Manual section 4.13 (Convenience copies of code)
N:    for details.
N:    
N:    Severity: normal, Certainty: possible
N:    
N:    Check: files, Type: binary, udeb
N: 
W: biomaj-watcher: codeless-jar usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/smartgwt-skins.jar
N: 
N:    The jar file contains a manifest but no code. This probably indicates
N:    that something went wrong at build-time.
N:    
N:    Severity: normal, Certainty: certain
N:    
N:    Check: java, Type: binary
N: 
W: biomaj-watcher: missing-classpath liblog4j1.2-java, libjsch-java, libjdom1-java, libcommons-lang-java, libcommons-logging-java, libquartz-java, libxerces2-java, libgnumail-java
N: 
N:    None of the jar files contained in the package declare a Class-Path in
N:    their manifest, but the package depends on at least one java library.
N:    That means that either the dependency is not needed or at least one of
N:    the JARs should include a classpath.
N:    
N:    It is important to keep the classpath up-to-date to allow the automatic
N:    detection of dependencies at run time. Having a Class-Path element in
N:    the manifest allows for painless transitions if the class path of the
N:    dependencies of the library ever changes.
N:    
N:    Failing to do that means that for every change in class path, all
N:    rdepends must update their wrapper scripts, which is a lot of work for
N:    nothing.
N:    
N:    Severity: normal, Certainty: possible
N:    
N:    Check: java, Type: binary
N: 
W: biomaj-watcher: menu-command-not-in-package usr/share/menu/biomaj-watcher:1 x-www-browser
N: 
N:    The menu item specifies a command which is not available in the package.
N:    In most cases this is a typo or after you moved a binary around, but
N:    forgot to update the menu file.
N:    
N:    Severity: normal, Certainty: possible
N:    
N:    Check: menu-format, Type: binary
N: 
P: biomaj-watcher: maintainer-script-without-set-e config
N: 
N:    The maintainer script passes -e to the shell on the #! line rather than
N:    using set -e in the body of the script. This is fine for normal
N:    operation, but if the script is run by hand with sh /path/to/script
N:    (common in debugging), -e will not be in effect. It's therefore better
N:    to use set -e in the body of the script.
N:    
N:    Refer to Debian Policy Manual section 10.4 (Scripts) for details.
N:    
N:    Severity: pedantic, Certainty: certain
N:    
N:    Check: scripts, Type: binary
N: