origdir = ../tarballs /home/sw/bin/buildPackage: line 17: .svn/deb-layout: No such file or directory Complete layout information: buildArea=/sw/debian-med/trunk/packages/adun.app/build-area origDir=/sw/debian-med/trunk/packages/adun.app/tarballs tagsDir=/sw/debian-med/trunk/packages/adun.app/tags tagsUrl=svn://svn.debian.org/svn/debian-med/trunk/packages/adun.app/tags trunkDir=/sw/debian-med/trunk/packages/adun.app/trunk trunkUrl=svn://svn.debian.org/svn/debian-med/trunk/packages/adun.app/trunk UNRELEASED tag found - you don't want to release with it, do you? mergeWithUpstream mode detected, looking for /sw/debian-med/trunk/packages/adun.app/tarballs/adun.app_0.81.orig.tar.gz I: mergeWithUpstream property set, looking for upstream source tarball... tar --no-same-owner --no-same-permissions --extract --gzip --file /sw/debian-med/trunk/packages/adun.app/tarballs/Adun-0.81.tar.gz --directory /sw/debian-med/trunk/packages/adun.app/build-area/tmp-0.861156016196222 mv /sw/debian-med/trunk/packages/adun.app/build-area/tmp-0.861156016196222/Adun-0.81 /sw/debian-med/trunk/packages/adun.app/build-area/adun.app-0.81 mkdir -p /sw/debian-med/trunk/packages/adun.app/build-area/adun.app-0.81/debian/patches /sw/debian-med/trunk/packages/adun.app/build-area/adun.app-0.81/debian <1 more argument> cp --parents -laf debian/manpages debian/copyright debian/README.Debian debian/patches/15_link-properly.patch debian/rules debian/patches/series debian/compat <15 more arguments> rm -rf /sw/debian-med/trunk/packages/adun.app/build-area/tmp-0.861156016196222 chmod -R u+r+w+X,g+r-w+X,o+r-w+X -- /sw/debian-med/trunk/packages/adun.app/build-area/adun.app-0.81 /bin/sh -c pdebuild --buildresult /sw/packages/build-area -- --basetgz /var/cache/pbuilder/base-sid-amd64.tgz --architecture amd64 --distribution sid W: /home/sw/.pbuilderrc does not exist dpkg-buildpackage: source package adun.app dpkg-buildpackage: source version 0.81-6 dpkg-buildpackage: source changed by Andreas Tille dpkg-source --before-build adun.app-0.81 dpkg-source: info: applying 05_no-plugin-script.patch dpkg-source: info: applying 15_link-properly.patch dpkg-source: info: applying 20_paths.patch dpkg-source: info: applying fix-implicit-pointer.patch fakeroot debian/rules clean dh_testdir dh_testroot /usr/bin/make distclean This is gnustep-make 2.6.2. Type 'make print-gnustep-make-help' for help. make[1]: Entering directory `/sw/debian-med/trunk/packages/adun.app/build-area/adun.app-0.81' rm -rf ./*~ ./obj Making clean in Kernel/ ... rm -rf ./*~ ./obj Making clean in Base ... rm -rf ./*~ ./obj Making clean in AdunKernel ... rm -rf ./*~ ./obj Making clean in subprojects of framework AdunKernel... rm -rf ./*~ ./obj rm -rf ./*~ ./obj Making clean in subprojects of subproject CoreAdditions... rm -rf ./*~ ./obj Making clean for framework AdunKernel... rm -rf ./Resources Making clean in MolTalk/ ... rm -rf ./*~ ./obj Making clean for framework MolTalk... Making clean in UL/ ... rm -rf ./*~ ./obj Making clean in XMLLib ... rm -rf ./*~ ./obj Making clean in ULFramework ... rm -rf ./*~ ./obj Making clean for framework ULFramework... Making clean in AdunServer ... rm -rf ./*~ ./obj (cd .; \ rm -rf *.app) Making distclean in Kernel/ ... Making distclean in Base ... make[3]: Nothing to be done for `distclean'. Making distclean in AdunKernel ... Making distclean in subprojects of framework AdunKernel... make[4]: Nothing to be done for `distclean'. Making distclean in subprojects of subproject CoreAdditions... make[5]: Nothing to be done for `distclean'. Making distclean for framework AdunKernel... make[4]: Nothing to be done for `internal-framework-distclean'. Making distclean in MolTalk/ ... Making distclean for framework MolTalk... make[3]: Nothing to be done for `internal-framework-distclean'. Making distclean in UL/ ... Making distclean in XMLLib ... make[3]: Nothing to be done for `distclean'. Making distclean in ULFramework ... Making distclean for framework ULFramework... make[4]: Nothing to be done for `internal-framework-distclean'. Making distclean in AdunServer ... make[3]: Nothing to be done for `distclean'. make[1]: Leaving directory `/sw/debian-med/trunk/packages/adun.app/build-area/adun.app-0.81' dh_clean build-stamp adun.xpm QUILT_PATCHES=debian/patches \ quilt --quiltrc /dev/null pop -a -R || test $? = 2 Removing patch fix-implicit-pointer.patch Restoring Kernel/AdunKernel/Framework/AdunCellListHandler.m Removing patch 20_paths.patch Restoring UL/AdunServer/main.m Restoring UL/ViewController.m Removing patch 15_link-properly.patch Restoring Kernel/GNUmakefile Restoring Kernel/Base/GNUmakefile.preamble Restoring Kernel/AdunKernel/GNUmakefile Restoring MolTalk/GNUmakefile.preamble Restoring UL/AdunServer/GNUmakefile Restoring UL/AdunServer/GNUmakefile.preamble Restoring UL/GNUmakefile Restoring UL/XMLLib/GNUmakefile.preamble Restoring UL/ULFramework/GNUmakefile Removing patch 05_no-plugin-script.patch Restoring GNUmakefile.postamble No patches applied rm -rf .pc debian/stamp-patched dpkg-source -b adun.app-0.81 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: applying 05_no-plugin-script.patch dpkg-source: info: applying 15_link-properly.patch dpkg-source: info: applying 20_paths.patch dpkg-source: info: applying fix-implicit-pointer.patch dpkg-source: info: building adun.app using existing ./adun.app_0.81.orig.tar.gz dpkg-source: info: building adun.app in adun.app_0.81-6.debian.tar.gz dpkg-source: info: building adun.app in adun.app_0.81-6.dsc dpkg-genchanges -S >../adun.app_0.81-6_source.changes dpkg-genchanges: not including original source code in upload dpkg-source --after-build adun.app-0.81 dpkg-source: info: unapplying fix-implicit-pointer.patch dpkg-source: info: unapplying 20_paths.patch dpkg-source: info: unapplying 15_link-properly.patch dpkg-source: info: unapplying 05_no-plugin-script.patch dpkg-buildpackage: binary and diff upload (original source NOT included) W: /home/sw/.pbuilderrc does not exist I: using fakeroot in build. I: Current time: Tue Mar 26 11:20:07 CET 2013 I: pbuilder-time-stamp: 1364293207 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/base-sid-amd64.tgz] I: creating local configuration I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /run/shm filesystem I: mounting /dev/pts filesystem I: policy-rc.d already exists I: Obtaining the cached apt archive contents I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 8), quilt, libgnustep-gui-dev, libgsl0-dev, imagemagick dpkg-deb: building package `pbuilder-satisfydepends-dummy' in `/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 12010 files and directories currently installed.) Unpacking pbuilder-satisfydepends-dummy (from .../pbuilder-satisfydepends-dummy.deb) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 8); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on quilt; however: Package quilt is not installed. pbuilder-satisfydepends-dummy depends on libgnustep-gui-dev; however: Package libgnustep-gui-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl0-dev; however: Package libgsl0-dev is not installed. pbuilder-satisfydepends-dummy depends on imagemagick; however: Package imagemagick is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... The following NEW packages will be installed: autotools-dev{a} bsdmainutils{a} debhelper{a} diffstat{a} file{a} fontconfig-config{a} gettext{a} gettext-base{a} gnustep-base-common{a} gnustep-base-runtime{a} gnustep-common{a} gnustep-gui-common{a} gnustep-gui-runtime{a} gnustep-make{a} gobjc{a} gobjc-4.7{a} groff-base{a} hicolor-icon-theme{a} html2text{a} imagemagick{a} imagemagick-common{a} intltool-debian{a} libao-common{a} libao4{a} libasound2{a} libaspell15{a} libasprintf-dev{a} libasprintf0c2{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libcroco3{a} libcups2{a} libdbus-1-3{a} libexpat1{a} libffi5{a} libflac8{a} libflite1{a} libfontconfig1{a} libfreetype6{a} libgcrypt11{a} libgettextpo-dev{a} libgettextpo0{a} libgif4{a} libglib2.0-0{a} libgnustep-base-dev{a} libgnustep-base1.22{a} libgnustep-gui-dev{a} libgnustep-gui0.20{a} libgnutls26{a} libgpg-error0{a} libgsl0-dev{a} libgsl0ldbl{a} libgssapi-krb5-2{a} libice6{a} libicu48{a} libjasper1{a} libjbig0 libjpeg8{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} liblqr-1-0{a} libltdl7{a} libmagic1{a} libmagickcore5{a} libmagickwand5{a} libobjc4{a} libogg0{a} libp11-kit0{a} libpcre3{a} libpipeline1{a} libpng12-0{a} libsm6{a} libsndfile1{a} libtasn1-3{a} libtiff4{a} libunistring0{a} libvorbis0a{a} libvorbisenc2{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxslt1.1{a} libxt6{a} man-db{a} po-debconf{a} quilt{a} sgml-base{a} ttf-dejavu-core{a} x11-common{a} xml-core{a} 0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 4734 kB/58.9 MB of archives. After unpacking 176 MB will be used. Writing extended state information... Get: 1 http://sid-approx.alteholz.net/debian/ sid/main libicu48 amd64 4.8.1.1-12 [4734 kB] Fetched 4734 kB in 16s (289 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:amd64. (Reading database ... 12010 files and directories currently installed.) Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.2-2_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-1_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.4_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.3-3_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. 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Unpacking gnustep-base-common (from .../gnustep-base-common_1.22.1-4_all.deb) ... Selecting previously unselected package libgnustep-base1.22. Unpacking libgnustep-base1.22 (from .../libgnustep-base1.22_1.22.1-4_amd64.deb) ... Selecting previously unselected package gnustep-base-runtime. Unpacking gnustep-base-runtime (from .../gnustep-base-runtime_1.22.1-4_amd64.deb) ... Selecting previously unselected package gnustep-gui-common. Unpacking gnustep-gui-common (from .../gnustep-gui-common_0.20.0-3_all.deb) ... Selecting previously unselected package libao-common. Unpacking libao-common (from .../libao-common_1.1.0-2_amd64.deb) ... Selecting previously unselected package libao4. Unpacking libao4 (from .../libao4_1.1.0-2_amd64.deb) ... Selecting previously unselected package libaspell15. Unpacking libaspell15 (from .../libaspell15_0.60.7~20110707-1_amd64.deb) ... Selecting previously unselected package libgif4. Unpacking libgif4 (from .../libgif4_4.1.6-10_amd64.deb) ... 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Unpacking libgnustep-base-dev (from .../libgnustep-base-dev_1.22.1-4_amd64.deb) ... Selecting previously unselected package libgnustep-gui-dev. Unpacking libgnustep-gui-dev (from .../libgnustep-gui-dev_0.20.0-3+b1_amd64.deb) ... Selecting previously unselected package libgsl0ldbl. Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.15+dfsg.2-2_amd64.deb) ... Selecting previously unselected package libgsl0-dev. Unpacking libgsl0-dev (from .../libgsl0-dev_1.15+dfsg.2-2_amd64.deb) ... Selecting previously unselected package quilt. Unpacking quilt (from .../archives/quilt_0.60-8_all.deb) ... Setting up libpipeline1:amd64 (1.2.2-2) ... Setting up groff-base (1.22.2-1) ... Setting up bsdmainutils (9.0.4) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.3-3) ... Building database of manual pages ... Setting up libasprintf0c2:amd64 (0.18.1.1-10) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-5) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2) ... Setting up libgnutls26:amd64 (2.12.20-5) ... Setting up libkeyutils1:amd64 (1.5.5-6) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-4+nmu1) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-4+nmu1) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-4+nmu1) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-4+nmu1) ... Setting up libmagic1:amd64 (1:5.11-2.1) ... Setting up libpcre3:amd64 (1:8.31-2) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7+nmu1) ... Setting up imagemagick-common (8:6.7.7.10-5) ... Setting up libasound2:amd64 (1.0.25-4) ... Setting up libavahi-common-data:amd64 (0.6.31-2) ... Setting up libavahi-common3:amd64 (0.6.31-2) ... Setting up libdbus-1-3:amd64 (1.6.8-1) ... Setting up libavahi-client3:amd64 (0.6.31-2) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libglib2.0-0:amd64 (2.33.12+really2.32.4-5) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.6-2) ... Setting up libcups2:amd64 (1.5.3-5) ... Setting up libexpat1:amd64 (2.1.0-1) ... Setting up libogg0:amd64 (1.3.0-4) ... Setting up libflac8:amd64 (1.2.1-6) ... Setting up libfreetype6:amd64 (2.4.9-1.1) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libgettextpo0:amd64 (0.18.1.1-10) ... Setting up x11-common (1:7.7+2) ... Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libicu48:amd64 (4.8.1.1-12) ... Setting up libjpeg8:amd64 (8d-1) ... Setting up libjasper1:amd64 (1.900.1-14) ... Setting up liblcms2-2:amd64 (2.2+git20110628-2.2) ... Setting up liblqr-1-0:amd64 (0.4.1-2) ... Setting up libltdl7:amd64 (2.4.2-1.2) ... Setting up libjbig0:amd64 (2.0-2) ... Setting up libpng12-0:amd64 (1.2.49-3) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libtiff4:amd64 (3.9.6-11) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2) ... Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:amd64 (2:1.5.0-1) ... Setting up libxext6:amd64 (2:1.3.1-2) ... Setting up libxt6:amd64 (1:1.1.3-1) ... Setting up libmagickcore5:amd64 (8:6.7.7.10-5) ... Setting up libmagickwand5:amd64 (8:6.7.7.10-5) ... Setting up libobjc4:amd64 (4.7.2-5) ... Setting up libvorbis0a:amd64 (1.3.2-1.3) ... Setting up libvorbisenc2:amd64 (1.3.2-1.3) ... Setting up libsndfile1:amd64 (1.0.25-5) ... Setting up libxslt1.1:amd64 (1.1.26-14) ... Setting up sgml-base (1.26+nmu4) ... Setting up libflite1:amd64 (1.4-release-6) ... Setting up file (1:5.11-2.1) ... Setting up gettext-base (0.18.1.1-10) ... Setting up autotools-dev (20120608.1) ... Setting up html2text (1.3.2a-15) ... Setting up libasprintf-dev:amd64 (0.18.1.1-10) ... Setting up libgettextpo-dev:amd64 (0.18.1.1-10) ... Setting up gettext (0.18.1.1-10) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120909) ... Setting up diffstat (1.55-3) ... Setting up gnustep-common (2.6.2-2) ... Setting up xml-core (0.13+nmu2) ... Setting up libao-common (1.1.0-2) ... Setting up libao4 (1.1.0-2) ... Setting up libaspell15 (0.60.7~20110707-1) ... Setting up libgif4 (4.1.6-10) ... Setting up gobjc-4.7 (4.7.2-5) ... Setting up gobjc (4:4.7.2-1) ... Setting up gnustep-make (2.6.2-2) ... Setting up hicolor-icon-theme (0.12-1) ... Setting up imagemagick (8:6.7.7.10-5) ... update-alternatives: using /usr/bin/compare.im6 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/animate.im6 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/convert.im6 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/composite.im6 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/conjure.im6 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/import.im6 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/identify.im6 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/stream.im6 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/display.im6 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/montage.im6 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/mogrify.im6 to provide /usr/bin/mogrify (mogrify) in auto mode Setting up libgsl0ldbl (1.15+dfsg.2-2) ... Setting up libgsl0-dev (1.15+dfsg.2-2) ... Setting up quilt (0.60-8) ... Processing triggers for sgml-base ... Setting up gnustep-base-common (1.22.1-4) ... Setting up libgnustep-base1.22 (1.22.1-4) ... Setting up gnustep-base-runtime (1.22.1-4) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up gnustep-gui-common (0.20.0-3) ... Setting up libgnustep-gui0.20 (0.20.0-3+b1) ... Setting up gnustep-gui-runtime (0.20.0-3+b1) ... Setting up libgnustep-base-dev (1.22.1-4) ... Setting up libgnustep-gui-dev (0.20.0-3+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: fakeroot debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/109 kB of archives. After this operation, 325 kB of additional disk space will be used. Selecting previously unselected package fakeroot. (Reading database ... 16624 files and directories currently installed.) Unpacking fakeroot (from .../fakeroot_1.18.4-2_amd64.deb) ... Processing triggers for man-db ... Setting up fakeroot (1.18.4-2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode I: Copying back the cached apt archive contents I: new cache content libicu48_4.8.1.1-12_amd64.deb added I: Copying source file I: copying [../adun.app_0.81-6.dsc] I: copying [../adun.app_0.81.orig.tar.gz] I: copying [../adun.app_0.81-6.debian.tar.gz] I: Extracting source dpkg-source: warning: extracting unsigned source package (adun.app_0.81-6.dsc) dpkg-source: info: extracting adun.app in adun.app-0.81 dpkg-source: info: unpacking adun.app_0.81.orig.tar.gz dpkg-source: info: unpacking adun.app_0.81-6.debian.tar.gz dpkg-source: info: applying 05_no-plugin-script.patch dpkg-source: info: applying 15_link-properly.patch dpkg-source: info: applying 20_paths.patch dpkg-source: info: applying fix-implicit-pointer.patch I: Building the package I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" dpkg-buildpackage -us -uc -rfakeroot dpkg-buildpackage: source package adun.app dpkg-buildpackage: source version 0.81-6 dpkg-buildpackage: source changed by Andreas Tille dpkg-source --before-build adun.app-0.81 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh_testdir dh_testroot /usr/bin/make distclean This is gnustep-make 2.6.2. Type 'make print-gnustep-make-help' for help. make[1]: Entering directory `/tmp/buildd/adun.app-0.81' rm -rf ./*~ ./obj Making clean in Kernel/ ... rm -rf ./*~ ./obj Making clean in Base ... rm -rf ./*~ ./obj Making clean in AdunKernel ... rm -rf ./*~ ./obj Making clean in subprojects of framework AdunKernel... rm -rf ./*~ ./obj rm -rf ./*~ ./obj Making clean in subprojects of subproject CoreAdditions... rm -rf ./*~ ./obj Making clean for framework AdunKernel... rm -rf ./Resources Making clean in MolTalk/ ... rm -rf ./*~ ./obj Making clean for framework MolTalk... Making clean in UL/ ... rm -rf ./*~ ./obj Making clean in XMLLib ... rm -rf ./*~ ./obj Making clean in ULFramework ... rm -rf ./*~ ./obj Making clean for framework ULFramework... Making clean in AdunServer ... rm -rf ./*~ ./obj (cd .; \ rm -rf *.app) Making distclean in Kernel/ ... Making distclean in Base ... make[3]: Nothing to be done for `distclean'. Making distclean in AdunKernel ... Making distclean in subprojects of framework AdunKernel... make[4]: Nothing to be done for `distclean'. Making distclean in subprojects of subproject CoreAdditions... make[5]: Nothing to be done for `distclean'. Making distclean for framework AdunKernel... make[4]: Nothing to be done for `internal-framework-distclean'. Making distclean in MolTalk/ ... Making distclean for framework MolTalk... make[3]: Nothing to be done for `internal-framework-distclean'. Making distclean in UL/ ... Making distclean in XMLLib ... make[3]: Nothing to be done for `distclean'. Making distclean in ULFramework ... Making distclean for framework ULFramework... make[4]: Nothing to be done for `internal-framework-distclean'. Making distclean in AdunServer ... make[3]: Nothing to be done for `distclean'. make[1]: Leaving directory `/tmp/buildd/adun.app-0.81' dh_clean build-stamp adun.xpm QUILT_PATCHES=debian/patches \ quilt --quiltrc /dev/null pop -a -R || test $? = 2 Removing patch fix-implicit-pointer.patch Restoring Kernel/AdunKernel/Framework/AdunCellListHandler.m Removing patch 20_paths.patch Restoring UL/ViewController.m Restoring UL/AdunServer/main.m Removing patch 15_link-properly.patch Restoring Kernel/AdunKernel/GNUmakefile Restoring Kernel/Base/GNUmakefile.preamble Restoring Kernel/GNUmakefile Restoring MolTalk/GNUmakefile.preamble Restoring UL/ULFramework/GNUmakefile Restoring UL/XMLLib/GNUmakefile.preamble Restoring UL/GNUmakefile Restoring UL/AdunServer/GNUmakefile Restoring UL/AdunServer/GNUmakefile.preamble Removing patch 05_no-plugin-script.patch Restoring GNUmakefile.postamble No patches applied rm -rf .pc debian/stamp-patched dpkg-source -b adun.app-0.81 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: applying 05_no-plugin-script.patch dpkg-source: info: applying 15_link-properly.patch dpkg-source: info: applying 20_paths.patch dpkg-source: info: applying fix-implicit-pointer.patch dpkg-source: info: building adun.app using existing ./adun.app_0.81.orig.tar.gz dpkg-source: info: building adun.app in adun.app_0.81-6.debian.tar.gz dpkg-source: info: building adun.app in adun.app_0.81-6.dsc debian/rules build QUILT_PATCHES=debian/patches \ quilt --quiltrc /dev/null push -a || test $? = 2 File series fully applied, ends at patch fix-implicit-pointer.patch touch debian/stamp-patched dh_testdir MAKELEVEL=0 /usr/bin/make GNUSTEP_MAKE_PARALLEL_BUILDING=no \ messages=yes LDFLAGS="-Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app" This is gnustep-make 2.6.2. Type 'make print-gnustep-make-help' for help. Making all in Kernel/ ... make[1]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel' Making all in Base ... make[2]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/Base' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for library libadun_base... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/libadun_base.obj/ gcc AdHarmonicBond.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdHarmonicBond.c.o In file included from ../Base/AdForceFieldFunctions.h:33:0, from AdHarmonicBond.c:30: ../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] gcc AdEnzymixBond.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdEnzymixBond.c.o In file included from ../Base/AdForceFieldFunctions.h:33:0, from AdEnzymixBond.c:29: ../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] gcc AdEnzymixAngle.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdEnzymixAngle.c.o In file included from ../Base/AdForceFieldFunctions.h:33:0, from AdEnzymixAngle.c:23: ../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] gcc AdHarmonicAngle.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdHarmonicAngle.c.o In file included from ../Base/AdForceFieldFunctions.h:33:0, from AdHarmonicAngle.c:23: ../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] gcc AdFourierTorsion.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdFourierTorsion.c.o In file included from ../Base/AdForceFieldFunctions.h:33:0, from AdFourierTorsion.c:23: ../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdFourierTorsion.c: In function 'AdFourierTorsionEnergy': AdFourierTorsion.c:45:17: warning: variable 'n1_n2' set but not used [-Wunused-but-set-variable] AdFourierTorsion.c:45:10: warning: variable 'n2_n1' set but not used [-Wunused-but-set-variable] AdFourierTorsion.c: In function 'AdCalculateTorsionAngle': AdFourierTorsion.c:550:16: warning: variable 'n1_n2' set but not used [-Wunused-but-set-variable] AdFourierTorsion.c:550:9: warning: variable 'n2_n1' set but not used [-Wunused-but-set-variable] gcc AdHarmonicImproperTorsion.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdHarmonicImproperTorsion.c.o In file included from ../Base/AdForceFieldFunctions.h:33:0, from AdHarmonicImproperTorsion.c:25: ../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdHarmonicImproperTorsion.c: In function 'AdHarmonicImproperTorsionEnergy': AdHarmonicImproperTorsion.c:100:17: warning: variable 'n1_n2' set but not used [-Wunused-but-set-variable] AdHarmonicImproperTorsion.c:100:10: warning: variable 'n2_n1' set but not used [-Wunused-but-set-variable] gcc AdCoulombAndLennardJonesA.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdCoulombAndLennardJonesA.c.o In file included from ../Base/AdForceFieldFunctions.h:33:0, from AdCoulombAndLennardJonesA.c:23: ../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdCoulombAndLennardJonesA.c: In function 'AdGRFCoulombAndLennardJonesAEnergy': AdCoulombAndLennardJonesA.c:497:10: warning: unused parameter 'b1' [-Wunused-parameter] gcc AdCoulombAndLennardJonesB.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdCoulombAndLennardJonesB.c.o In file included from ../Base/AdForceFieldFunctions.h:33:0, from AdCoulombAndLennardJonesB.c:23: ../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdCoulombAndLennardJonesB.c: In function 'AdGRFCoulombAndLennardJonesBEnergy': AdCoulombAndLennardJonesB.c:351:10: warning: unused parameter 'b1' [-Wunused-parameter] gcc AdLinkedList.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdLinkedList.c.o In file included from AdLinkedList.c:23:0: ../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdLinkedList.c:53:76: warning: unused parameter 'index' [-Wunused-parameter] gcc AdMatrix.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdMatrix.c.o AdMatrix.c: In function 'AdSparseMatrixRowLength': AdMatrix.c:638:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc AdGeneralizedBornFunctions.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdGeneralizedBornFunctions.c.o In file included from AdGeneralizedBornFunctions.h:31:0, from AdGeneralizedBornFunctions.c:23: ../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdGeneralizedBornFunctions.c: In function 'AdGBEBornRadiusDerivative': AdGeneralizedBornFunctions.c:223:33: warning: unused variable 'forceMagnitude' [-Wunused-variable] AdGeneralizedBornFunctions.c: In function 'AdGBEBornRadiusCoefficient': AdGeneralizedBornFunctions.c:262:33: warning: unused variable 'forceMagnitude' [-Wunused-variable] gcc AdQuaternion.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdQuaternion.c.o AdQuaternion.c:24:1: warning: missing braces around initializer [-Wmissing-braces] AdQuaternion.c:24:1: warning: (near initialization for 'x.vector') [-Wmissing-braces] AdQuaternion.c:25:1: warning: missing braces around initializer [-Wmissing-braces] AdQuaternion.c:25:1: warning: (near initialization for 'y.vector') [-Wmissing-braces] AdQuaternion.c:26:1: warning: missing braces around initializer [-Wmissing-braces] AdQuaternion.c:26:1: warning: (near initialization for 'z.vector') [-Wmissing-braces] gcc AdQuadratureFunctions.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdQuadratureFunctions.c.o AdQuadratureFunctions.c: In function 'AdGenerateGaussLegendrePoints': AdQuadratureFunctions.c:93:18: warning: variable 'count' set but not used [-Wunused-but-set-variable] gcc AdSorter.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdSorter.c.o gcc AdVector.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdVector.c.o gcc AdVolumeFunctions.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdVolumeFunctions.c.o In file included from AdVolumeFunctions.h:32:0, from AdVolumeFunctions.c:23: ../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdVolumeFunctions.c: In function 'AdVolumeExclusionFunction': AdVolumeFunctions.c:235:11: warning: variable 'matrix' set but not used [-Wunused-but-set-variable] AdVolumeFunctions.c:234:43: warning: unused variable 'checkVal' [-Wunused-variable] AdVolumeFunctions.c:234:24: warning: unused variable 'smoothingBoundary' [-Wunused-variable] AdVolumeFunctions.c:233:9: warning: unused variable 'j' [-Wunused-variable] AdVolumeFunctions.c: In function 'AdVolumeExclusionFunction2': AdVolumeFunctions.c:310:36: warning: unused variable 'checkVal' [-Wunused-variable] AdVolumeFunctions.c:310:17: warning: unused variable 'smoothingBoundary' [-Wunused-variable] AdVolumeFunctions.c:309:9: warning: unused variable 'j' [-Wunused-variable] AdVolumeFunctions.c: In function 'AdVolumeFunctionAtomDerivative': AdVolumeFunctions.c:430:9: warning: unused variable 'value' [-Wunused-variable] AdVolumeFunctions.c: In function 'AdVolumeFunctionPositionDerivative': AdVolumeFunctions.c:569:9: warning: unused variable 'value' [-Wunused-variable] AdVolumeFunctions.c: In function 'AdAVEFunctionPositionDerivative': AdVolumeFunctions.c:147:1: warning: control reaches end of non-void function [-Wreturn-type] gcc AdBaseFunctions.c -c \ -MMD -MP -DSAFE_ANGLE -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -W -static -O3 -I/usr/local/include -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libadun_base.obj/AdBaseFunctions.c.o gcc -shared -Wl,-soname,libadun_base.so.0 -rdynamic -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./obj/libadun_base.so.0.0.1 obj/libadun_base.obj/AdHarmonicBond.c.o obj/libadun_base.obj/AdEnzymixBond.c.o obj/libadun_base.obj/AdEnzymixAngle.c.o obj/libadun_base.obj/AdHarmonicAngle.c.o obj/libadun_base.obj/AdFourierTorsion.c.o obj/libadun_base.obj/AdHarmonicImproperTorsion.c.o obj/libadun_base.obj/AdCoulombAndLennardJonesA.c.o obj/libadun_base.obj/AdCoulombAndLennardJonesB.c.o obj/libadun_base.obj/AdLinkedList.c.o obj/libadun_base.obj/AdMatrix.c.o obj/libadun_base.obj/AdGeneralizedBornFunctions.c.o obj/libadun_base.obj/AdQuaternion.c.o obj/libadun_base.obj/AdQuadratureFunctions.c.o obj/libadun_base.obj/AdSorter.c.o obj/libadun_base.obj/AdVector.c.o obj/libadun_base.obj/AdVolumeFunctions.c.o obj/libadun_base.obj/AdBaseFunctions.c.o -L/usr/local/lib -L/usr/local/lib -L/usr/lib -lgsl -lm && (cd ./obj; rm -f libadun_base.so; if [ "libadun_base.so.0" != "libadun_base.so.0.0.1" ]; then rm -f libadun_base.so.0; ln -s libadun_base.so.0.0.1 libadun_base.so.0; fi; ln -s libadun_base.so.0 libadun_base.so; ) make[2]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/Base' Making all in AdunKernel ... make[2]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel' Making build-headers in subprojects of framework AdunKernel... make[3]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' Making build-headers for subproject Framework... /usr/share/GNUstep/Makefiles/mkinstalldirs ../AdunKernel.framework/Versions/0/Headers make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' make[3]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making build-headers in subprojects of subproject CoreAdditions... make[4]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making build-headers for subproject CoreCommands... /usr/bin/install -c -p -m 644 AdStatusCommand.h ../../AdunKernel.framework/Versions/0/Headers/AdStatusCommand.h /usr/bin/install -c -p -m 644 AdEndSimulationCommand.h ../../AdunKernel.framework/Versions/0/Headers/AdEndSimulationCommand.h make[4]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making build-headers for subproject CoreAdditions... make[4]: Nothing to be done for `internal-subproject-build-headers'. make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making build-headers for framework AdunKernel... /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdFrameworkFunctions.h AdunKernel.framework/Versions/0/Headers/AdFrameworkFunctions.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunDefinitions.h AdunKernel.framework/Versions/0/Headers/AdunDefinitions.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdDataSources.h AdunKernel.framework/Versions/0/Headers/AdDataSources.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdGridDelegate.h AdunKernel.framework/Versions/0/Headers/AdGridDelegate.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdServerInterface.h AdunKernel.framework/Versions/0/Headers/AdServerInterface.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdIndexSetConversions.h AdunKernel.framework/Versions/0/Headers/AdIndexSetConversions.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdMemento.h AdunKernel.framework/Versions/0/Headers/AdMemento.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdMatrixModification.h AdunKernel.framework/Versions/0/Headers/AdMatrixModification.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunTimer.h AdunKernel.framework/Versions/0/Headers/AdunTimer.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunModelObject.h AdunKernel.framework/Versions/0/Headers/AdunModelObject.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunMatrixStructureCoder.h AdunKernel.framework/Versions/0/Headers/AdunMatrixStructureCoder.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunDataMatrix.h AdunKernel.framework/Versions/0/Headers/AdunDataMatrix.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunDataSet.h AdunKernel.framework/Versions/0/Headers/AdunDataSet.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunDataSource.h AdunKernel.framework/Versions/0/Headers/AdunDataSource.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunContainerDataSource.h AdunKernel.framework/Versions/0/Headers/AdunContainerDataSource.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunElementSelection.h AdunKernel.framework/Versions/0/Headers/AdunElementSelection.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunGrid.h AdunKernel.framework/Versions/0/Headers/AdunGrid.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSphericalBox.h AdunKernel.framework/Versions/0/Headers/AdunSphericalBox.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunEllipsoidBox.h AdunKernel.framework/Versions/0/Headers/AdunEllipsoidBox.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunCuboidBox.h AdunKernel.framework/Versions/0/Headers/AdunCuboidBox.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunMoleculeCavity.h AdunKernel.framework/Versions/0/Headers/AdunMoleculeCavity.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunCellListHandler.h AdunKernel.framework/Versions/0/Headers/AdunCellListHandler.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSimpleListHandler.h AdunKernel.framework/Versions/0/Headers/AdunSimpleListHandler.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunLinkedList.h AdunKernel.framework/Versions/0/Headers/AdunLinkedList.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunListHandler.h AdunKernel.framework/Versions/0/Headers/AdunListHandler.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunDynamics.h AdunKernel.framework/Versions/0/Headers/AdunDynamics.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunInteractionSystem.h AdunKernel.framework/Versions/0/Headers/AdunInteractionSystem.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSystem.h AdunKernel.framework/Versions/0/Headers/AdunSystem.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSystemCollection.h AdunKernel.framework/Versions/0/Headers/AdunSystemCollection.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdForceFieldTerm.h AdunKernel.framework/Versions/0/Headers/AdForceFieldTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunHarmonicConstraintTerm.h AdunKernel.framework/Versions/0/Headers/AdunHarmonicConstraintTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSCAAS.h AdunKernel.framework/Versions/0/Headers/AdunSCAAS.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunNonbondedTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunPureNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunPureNonbondedTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunGRFNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunGRFNonbondedTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunShiftedNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunShiftedNonbondedTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunMultithreadedNonbondedTerm.h AdunKernel.framework/Versions/0/Headers/AdunMultithreadedNonbondedTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSmoothedGBTerm.h AdunKernel.framework/Versions/0/Headers/AdunSmoothedGBTerm.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunForceField.h AdunKernel.framework/Versions/0/Headers/AdunForceField.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunMolecularMechanicsForceField.h AdunKernel.framework/Versions/0/Headers/AdunMolecularMechanicsForceField.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunEnzymixForceField.h AdunKernel.framework/Versions/0/Headers/AdunEnzymixForceField.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunAmberForceField.h AdunKernel.framework/Versions/0/Headers/AdunAmberForceField.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunCharmmForceField.h AdunKernel.framework/Versions/0/Headers/AdunCharmmForceField.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunForceFieldCollection.h AdunKernel.framework/Versions/0/Headers/AdunForceFieldCollection.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunConfigurationGenerator.h AdunKernel.framework/Versions/0/Headers/AdunConfigurationGenerator.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSimulator.h AdunKernel.framework/Versions/0/Headers/AdunSimulator.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunLangevinThermostat.h AdunKernel.framework/Versions/0/Headers/AdunLangevinThermostat.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunBerendsenThermostat.h AdunKernel.framework/Versions/0/Headers/AdunBerendsenThermostat.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunMinimiser.h AdunKernel.framework/Versions/0/Headers/AdunMinimiser.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunMemoryManager.h AdunKernel.framework/Versions/0/Headers/AdunMemoryManager.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdCoreCommand.h AdunKernel.framework/Versions/0/Headers/AdCoreCommand.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdCoreAdditions.h AdunKernel.framework/Versions/0/Headers/AdCoreAdditions.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdCommandInterface.h AdunKernel.framework/Versions/0/Headers/AdCommandInterface.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdController.h AdunKernel.framework/Versions/0/Headers/AdController.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunIOManager.h AdunKernel.framework/Versions/0/Headers/AdunIOManager.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunSimulationData.h AdunKernel.framework/Versions/0/Headers/AdunSimulationData.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunTrajectory.h AdunKernel.framework/Versions/0/Headers/AdunTrajectory.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunFileSystemSimulationStorage.h AdunKernel.framework/Versions/0/Headers/AdunFileSystemSimulationStorage.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunController.h AdunKernel.framework/Versions/0/Headers/AdunController.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunTemplateProcessor.h AdunKernel.framework/Versions/0/Headers/AdunTemplateProcessor.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunCheckpointManager.h AdunKernel.framework/Versions/0/Headers/AdunCheckpointManager.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunCore.h AdunKernel.framework/Versions/0/Headers/AdunCore.h /usr/bin/install -c -p -m 644 Headers/AdunKernel/AdunKernel.h AdunKernel.framework/Versions/0/Headers/AdunKernel.h /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs AdunKernel.framework/Versions/0/Resources cd ./AdunKernel.framework/Versions; \ rm -f Current; \ ln -s 0 Current cd ./AdunKernel.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "AdunKernel" ]; then \ rm -f ./AdunKernel; \ ln -s ../AdunKernel.framework/Headers \ ./AdunKernel; \ fi cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all in subprojects of framework AdunKernel... make[3]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for subproject Framework... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/Framework.obj/ gcc AdFrameworkFunctions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdFrameworkFunctions.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from AdFrameworkFunctions.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] gcc AdIndexSetConversions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdIndexSetConversions.m.o AdIndexSetConversions.m: In function '-[NSIndexSet(AdIndexSetConversions) initWithCoder:]': AdIndexSetConversions.m:122:3: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] AdIndexSetConversions.m:122:3: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdIndexSetConversions.m:127:3: warning: passing argument 1 of 'decodeBytesWithReturnedLength:' from incompatible pointer type [enabled by default] AdIndexSetConversions.m:127:3: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' gcc AdunTimer.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunTimer.m.o gcc AdunModelObject.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunModelObject.m.o AdunModelObject.m: In function '-[AdModelObject addInputReferenceToObjectWithID:name:ofType:inSchema:ofDatabase:]': AdunModelObject.m:232:1: warning: unused parameter 'objectName' [-Wunused-parameter] AdunModelObject.m:232:1: warning: unused parameter 'schema' [-Wunused-parameter] AdunModelObject.m:232:1: warning: unused parameter 'databaseName' [-Wunused-parameter] AdunModelObject.m: In function '-[AdModelObject addOutputReferenceToObjectWithID:name:ofType:inSchema:ofDatabase:]': AdunModelObject.m:324:1: warning: unused parameter 'objectName' [-Wunused-parameter] AdunModelObject.m:324:1: warning: unused parameter 'schema' [-Wunused-parameter] AdunModelObject.m:324:1: warning: unused parameter 'databaseName' [-Wunused-parameter] gcc AdunMatrixStructureCoder.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunMatrixStructureCoder.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from AdunMatrixStructureCoder.m:26: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] gcc AdunDataMatrix.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunDataMatrix.m.o AdunDataMatrix.m: In function '-[NSArray(AdKernelAdditions) subarrayFromElementSelection:]': AdunDataMatrix.m:126:4: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] AdunDataMatrix.m:126:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m: In function '+[AdDataMatrix initialize]': AdunDataMatrix.m:376:5: warning: @interface of class 'NSDoubleNumber' not found [enabled by default] AdunDataMatrix.m:377:5: warning: @interface of class 'NSIntNumber' not found [enabled by default] AdunDataMatrix.m: In function '-[AdDataMatrix submatrixFromRowSelection:]': AdunDataMatrix.m:1168:4: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] AdunDataMatrix.m:1168:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m: In function '-[AdDataMatrix _initWithCoderPre0:7:]': AdunDataMatrix.m:1279:6: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] AdunDataMatrix.m:1279:6: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m:1264:6: warning: variable 'matrixElements' set but not used [-Wunused-but-set-variable] AdunDataMatrix.m: In function '-[AdDataMatrix initWithCoder:]': AdunDataMatrix.m:1570:5: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] AdunDataMatrix.m:1570:5: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m:1576:5: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] AdunDataMatrix.m:1576:5: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m:1605:3: warning: passing argument 1 of 'decodeBytesWithReturnedLength:' from incompatible pointer type [enabled by default] AdunDataMatrix.m:1605:3: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m:1609:3: warning: passing argument 1 of 'decodeBytesWithReturnedLength:' from incompatible pointer type [enabled by default] AdunDataMatrix.m:1609:3: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m: In function '-[AdMutableDataMatrix extendMatrixWithColumnValues:]': AdunDataMatrix.m:2145:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunDataMatrix.m: In function '-[AdMutableDataMatrix removeRowsWithIndexes:]': AdunDataMatrix.m:2195:4: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] AdunDataMatrix.m:2195:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataMatrix.m:2196:2: warning: passing argument 1 of 'removeObjectsFromIndices:numIndices:' from incompatible pointer type [enabled by default] AdunDataMatrix.m:2196:2: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' gcc AdunDataSet.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunDataSet.m.o gcc AdunDataSource.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunDataSource.m.o AdunDataSource.m: In function '-[AdDataSource initWithDataSource:]': AdunDataSource.m:239:3: warning: 'AdDataSource' may not respond to '-setNonbondedPairs:' [enabled by default] AdunDataSource.m:239:3: warning: (Messages without a matching method signature [enabled by default] AdunDataSource.m:239:3: warning: will be assumed to return 'id' and accept [enabled by default] AdunDataSource.m:239:3: warning: '...' as arguments.) [enabled by default] AdunDataSource.m: In function '-[AdDataSource elementPairsNotInInteractionsOfCategory:]': AdunDataSource.m:286:1: warning: unused parameter 'aString' [-Wunused-parameter] AdunDataSource.m: In function '-[AdDataSource groupsForInteraction:containingElement:]': AdunDataSource.m:348:1: warning: unused parameter 'interaction' [-Wunused-parameter] AdunDataSource.m:348:1: warning: unused parameter 'elementIndex' [-Wunused-parameter] AdunDataSource.m: In function '-[AdDataSource constraintForInteraction:]': AdunDataSource.m:382:1: warning: unused parameter 'interaction' [-Wunused-parameter] AdunDataSource.m: In function '-[AdDataSource indexSetArrayForCategory:]': AdunDataSource.m:387:1: warning: unused parameter 'category' [-Wunused-parameter] AdunDataSource.m: In function '-[AdDataSource(AdDataSourceCodingExtensions) _decodeIndexArrayForKey:usingCoder:encodedByteOrder:]': AdunDataSource.m:521:8: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] AdunDataSource.m:521:8: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataSource.m:525:6: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] AdunDataSource.m:525:6: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataSource.m:530:3: warning: passing argument 1 of 'decodeBytesWithReturnedLength:' from incompatible pointer type [enabled by default] AdunDataSource.m:530:3: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataSource.m:532:3: warning: passing argument 1 of 'decodeBytesWithReturnedLength:' from incompatible pointer type [enabled by default] AdunDataSource.m:532:3: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunDataSource.m: In function '-[AdMutableDataSource(BiomolecularSystemExtensions) _residueForElement:]': AdunDataSource.m:1256:16: warning: variable 'arrayEnum' set but not used [-Wunused-but-set-variable] gcc AdunContainerDataSource.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunContainerDataSource.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunContainerDataSource.h:32, from AdunContainerDataSource.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunContainerDataSource.m: In function '-[AdContainerDataSource indexSetArrayForCategory:]': AdunContainerDataSource.m:726:1: warning: unused parameter 'category' [-Wunused-parameter] AdunContainerDataSource.m: At top level: AdunContainerDataSource.m:812:1: warning: incomplete implementation of class 'AdContainerDataSource' [enabled by default] AdunContainerDataSource.m:812:1: warning: method definition for '-constraintForInteraction:' not found [enabled by default] AdunContainerDataSource.m:812:1: warning: method definition for '-groupsForInteraction:containingElement:' not found [enabled by default] AdunContainerDataSource.m:812:1: warning: method definition for '-indexesOfElementsWithValues:forProperty:' not found [enabled by default] AdunContainerDataSource.m:812:1: warning: class 'AdContainerDataSource' does not fully implement the 'AdSystemDataSource' protocol [enabled by default] AdunContainerDataSource.m: In function '-[AdContainerDataSource(AdContainerDataSourceInsertionExtensions) insertSystem:]': AdunContainerDataSource.m:870:16: warning: variable 'coordinates' set but not used [-Wunused-but-set-variable] AdunContainerDataSource.m: In function '-[AdContainerDataSource(AdContainerDataSourceInsertionExtensions) removeSystem:]': AdunContainerDataSource.m:922:35: warning: variable 'configuration' set but not used [-Wunused-but-set-variable] gcc AdunElementSelection.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunElementSelection.m.o AdunElementSelection.m: In function '-[AdElementSelection setSelectionString:]': AdunElementSelection.m:173:32: warning: variable 'commaSet' set but not used [-Wunused-but-set-variable] AdunElementSelection.m: In function '-[AdElementSelection _rowsInMatrix:matchingSpecifiers:categoryColumn:subcategoryColumn:restrictToRows:]': AdunElementSelection.m:347:2: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] AdunElementSelection.m:347:2: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' AdunElementSelection.m:275:1: warning: unused parameter 'subcategoryColumn' [-Wunused-parameter] AdunElementSelection.m: In function '-[AdElementSelection matchingGroupsInDataSource:]': AdunElementSelection.m:373:11: warning: variable 'groupSpecifiers' set but not used [-Wunused-but-set-variable] gcc AdunGrid.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunGrid.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunCuboidBox.h:26, from AdunGrid.m:26: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunGrid.m: In function '-[AdGrid initWithDensity:cavity:]': AdunGrid.m:216:1: warning: unused parameter 'density' [-Wunused-parameter] AdunGrid.m:216:1: warning: unused parameter 'cavity' [-Wunused-parameter] AdunGrid.m: In function '-[AdGrid initWithDivisions:cavity:]': AdunGrid.m:222:1: warning: unused parameter 'divisions' [-Wunused-parameter] AdunGrid.m:222:1: warning: unused parameter 'cavity' [-Wunused-parameter] gcc AdunSphericalBox.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSphericalBox.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunSphericalBox.h:5, from AdunSphericalBox.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] gcc AdunEllipsoidBox.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunEllipsoidBox.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunEllipsoidBox.h:5, from AdunEllipsoidBox.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] gcc AdunCuboidBox.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunCuboidBox.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunCuboidBox.h:26, from AdunCuboidBox.m:23: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] gcc AdunMoleculeCavity.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunMoleculeCavity.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from AdunMoleculeCavity.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunMoleculeCavity.m: In function '-[AdMoleculeCavity _calculateCavityExtremes]': AdunMoleculeCavity.m:63:9: warning: 'min[0]' may be used uninitialized in this function [-Wuninitialized] AdunMoleculeCavity.m:63:17: warning: 'max[0]' may be used uninitialized in this function [-Wuninitialized] AdunMoleculeCavity.m:63:17: warning: 'max[1]' may be used uninitialized in this function [-Wuninitialized] AdunMoleculeCavity.m:63:9: warning: 'min[1]' may be used uninitialized in this function [-Wuninitialized] gcc AdunCellListHandler.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunCellListHandler.m.o In file included from ../Headers/AdunKernel/AdunCellListHandler.h:34:0, from AdunCellListHandler.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunCellListHandler.m: In function '-[AdCellListHandler _handleSystemContentsChange:]': AdunCellListHandler.m:320:1: warning: unused parameter 'aNotification' [-Wunused-parameter] AdunCellListHandler.m: In function '-[AdCellListHandler createList]': AdunCellListHandler.m:391:17: warning: variable 'cell' set but not used [-Wunused-but-set-variable] gcc AdunSimpleListHandler.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSimpleListHandler.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSimpleListHandler.h:29, from AdunSimpleListHandler.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunSimpleListHandler.m: In function '-[AdSimpleListHandler _handleSystemContentsChange:]': AdunSimpleListHandler.m:93:1: warning: unused parameter 'aNotification' [-Wunused-parameter] AdunSimpleListHandler.m: In function '-[AdSimpleListHandler createList]': AdunSimpleListHandler.m:153:5: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] AdunSimpleListHandler.m:153:5: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' gcc AdunLinkedList.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunLinkedList.m.o In file included from ../Headers/AdunKernel/AdunLinkedList.h:29:0, from AdunLinkedList.m:23: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunLinkedList.m: In function '-[AdLinkedList _reinsertElement:]': AdunLinkedList.m:122:7: warning: variable 'firstElement' set but not used [-Wunused-but-set-variable] gcc AdunListHandler.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunListHandler.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from AdunListHandler.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunListHandler.m: In function '-[AdListHandler initWithSystem:allowedPairs:cutoff:]': AdunListHandler.m:27:1: warning: unused parameter 'aSystem' [-Wunused-parameter] AdunListHandler.m:27:1: warning: unused parameter 'anArray' [-Wunused-parameter] AdunListHandler.m:27:1: warning: unused parameter 'aDouble' [-Wunused-parameter] AdunListHandler.m: In function '-[AdListHandler setCutoff:]': AdunListHandler.m:44:1: warning: unused parameter 'aValue' [-Wunused-parameter] AdunListHandler.m: In function '-[AdListHandler setAllowedPairs:]': AdunListHandler.m:57:1: warning: unused parameter 'anArray' [-Wunused-parameter] AdunListHandler.m: In function '-[AdListHandler setDelegate:]': AdunListHandler.m:84:1: warning: unused parameter 'delegate' [-Wunused-parameter] AdunListHandler.m: In function '-[AdListHandler setSystem:]': AdunListHandler.m:97:1: warning: unused parameter 'aSystem' [-Wunused-parameter] gcc AdunDynamics.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunDynamics.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from AdunDynamics.m:25: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunDynamics.m: In function '-[AdDynamics object:willBeginWritingToMatrix:]': AdunDynamics.m:439:1: warning: unused parameter 'object' [-Wunused-parameter] AdunDynamics.m: In function '-[AdDynamics object:didFinishWritingToMatrix:]': AdunDynamics.m:453:1: warning: unused parameter 'object' [-Wunused-parameter] gcc AdunInteractionSystem.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunInteractionSystem.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunInteractionSystem.h:28, from AdunInteractionSystem.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunInteractionSystem.m: In function '-[AdInteractionSystem indexSetArrayForCategory:]': AdunInteractionSystem.m:495:1: warning: unused parameter 'category' [-Wunused-parameter] gcc AdunSystem.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSystem.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from AdunSystem.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunSystem.m: In function '-[AdSystem validateMemento:]': AdunSystem.m:313:1: warning: unused parameter 'aMemento' [-Wunused-parameter] gcc AdunSystemCollection.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSystemCollection.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from AdunSystemCollection.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] gcc AdunHarmonicConstraintTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunHarmonicConstraintTerm.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunHarmonicConstraintTerm.h:29, from AdunHarmonicConstraintTerm.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm initWithSystem:forceConstant:contrainingElementsMatchingSelectionString:]': AdunHarmonicConstraintTerm.m:48:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunHarmonicConstraintTerm.m:45:1: warning: unused parameter 'system' [-Wunused-parameter] AdunHarmonicConstraintTerm.m:45:1: warning: unused parameter 'forceConstant' [-Wunused-parameter] AdunHarmonicConstraintTerm.m:45:1: warning: unused parameter 'selectionString' [-Wunused-parameter] AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm initWithSystem:forceConstant:container:constraintType:]': AdunHarmonicConstraintTerm.m:132:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm initWithSystem:forceConstant:constrainingElements:]': AdunHarmonicConstraintTerm.m:141:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm setExternalForceMatrix:]': AdunHarmonicConstraintTerm.m:232:1: warning: unused parameter 'matrix' [-Wunused-parameter] AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm setSystem:]': AdunHarmonicConstraintTerm.m:247:1: warning: unused parameter 'system' [-Wunused-parameter] AdunHarmonicConstraintTerm.m: In function '-[AdHarmonicConstraintTerm evaluateForces]': AdunHarmonicConstraintTerm.m:192:68: warning: array subscript is above array bounds [-Warray-bounds] gcc AdunSCAAS.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSCAAS.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSCAAS.h:37, from AdunSCAAS.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunSCAAS.m: In function '-[AdSCAAS _applyPolarisationConstraint]': AdunSCAAS.m:518:35: warning: variable 'coordinates' set but not used [-Wunused-but-set-variable] AdunSCAAS.m:518:11: warning: variable 'velocities' set but not used [-Wunused-but-set-variable] AdunSCAAS.m: In function '-[AdSCAAS setExternalForceMatrix:]': AdunSCAAS.m:637:1: warning: unused parameter 'matrix' [-Wunused-parameter] gcc AdunNonbondedTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunNonbondedTerm.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunNonbondedTerm.h:28, from AdunNonbondedTerm.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm initWithSystem:]': AdunNonbondedTerm.m:31:1: warning: unused parameter 'system' [-Wunused-parameter] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm initWithSystem:cutoff:updateInterval:nonbondedPairs:externalForceMatrix:]': AdunNonbondedTerm.m:41:1: warning: unused parameter 'aSystem' [-Wunused-parameter] AdunNonbondedTerm.m:41:1: warning: unused parameter 'aDouble' [-Wunused-parameter] AdunNonbondedTerm.m:41:1: warning: unused parameter 'anInt' [-Wunused-parameter] AdunNonbondedTerm.m:41:1: warning: unused parameter 'nonbondedPairs' [-Wunused-parameter] AdunNonbondedTerm.m:41:1: warning: unused parameter 'matrix' [-Wunused-parameter] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm handlerDidUpdateList:]': AdunNonbondedTerm.m:82:1: warning: unused parameter 'handler' [-Wunused-parameter] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm electrostaticEnergy]': AdunNonbondedTerm.m:89:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm lennardJonesEnergy]': AdunNonbondedTerm.m:94:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm energy]': AdunNonbondedTerm.m:99:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm lennardJonesType]': AdunNonbondedTerm.m:104:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm permittivity]': AdunNonbondedTerm.m:109:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setPermittivity:]': AdunNonbondedTerm.m:112:1: warning: unused parameter 'aDouble' [-Wunused-parameter] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm cutoff]': AdunNonbondedTerm.m:119:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setCutoff:]': AdunNonbondedTerm.m:122:1: warning: unused parameter 'aDouble' [-Wunused-parameter] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm updateInterval]': AdunNonbondedTerm.m:129:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setUpdateInterval:]': AdunNonbondedTerm.m:132:1: warning: unused parameter 'anInt' [-Wunused-parameter] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setExternalForceMatrix:]': AdunNonbondedTerm.m:137:1: warning: unused parameter 'matrix' [-Wunused-parameter] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm forces]': AdunNonbondedTerm.m:144:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm usesExternalForceMatrix]': AdunNonbondedTerm.m:149:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setSystem:]': AdunNonbondedTerm.m:152:1: warning: unused parameter 'anObject' [-Wunused-parameter] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm system]': AdunNonbondedTerm.m:159:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm canEvaluateEnergy]': AdunNonbondedTerm.m:164:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm canEvaluateForces]': AdunNonbondedTerm.m:169:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm setNonbondedPairs:]': AdunNonbondedTerm.m:172:1: warning: unused parameter 'nonbondedPairs' [-Wunused-parameter] AdunNonbondedTerm.m: In function '-[AdNonbondedTerm nonbondedPairs]': AdunNonbondedTerm.m:179:1: warning: no return statement in function returning non-void [-Wreturn-type] gcc AdunPureNonbondedTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunPureNonbondedTerm.m.o In file included from ../../Base/AdForceFieldFunctions.h:33:0, from ../Headers/AdunKernel/AdunPureNonbondedTerm.h:26, from AdunPureNonbondedTerm.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunPureNonbondedTerm.m: In function '-[AdPureNonbondedTerm handlerDidUpdateList:]': AdunPureNonbondedTerm.m:488:1: warning: unused parameter 'handler' [-Wunused-parameter] AdunPureNonbondedTerm.m: In function '-[AdPureNonbondedTerm handlerDidInvalidateList:]': AdunPureNonbondedTerm.m:493:1: warning: unused parameter 'handler' [-Wunused-parameter] AdunPureNonbondedTerm.m: In function '-[AdPureNonbondedTerm handlerDidHandleContentChange:]': AdunPureNonbondedTerm.m:498:1: warning: unused parameter 'handler' [-Wunused-parameter] AdunPureNonbondedTerm.m: In function '-[AdPureNonbondedTerm copyWithZone:]': AdunPureNonbondedTerm.m:812:1: warning: unused parameter 'aZone' [-Wunused-parameter] gcc AdunGRFNonbondedTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunGRFNonbondedTerm.m.o In file included from ../../Base/AdForceFieldFunctions.h:33:0, from ../Headers/AdunKernel/AdunGRFNonbondedTerm.h:26, from AdunGRFNonbondedTerm.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunGRFNonbondedTerm.m: In function '-[AdGRFNonbondedTerm handlerDidUpdateList:]': AdunGRFNonbondedTerm.m:521:1: warning: unused parameter 'handler' [-Wunused-parameter] AdunGRFNonbondedTerm.m: In function '-[AdGRFNonbondedTerm handlerDidInvalidateList:]': AdunGRFNonbondedTerm.m:526:1: warning: unused parameter 'handler' [-Wunused-parameter] AdunGRFNonbondedTerm.m: In function '-[AdGRFNonbondedTerm handlerDidHandleContentChange:]': AdunGRFNonbondedTerm.m:531:1: warning: unused parameter 'handler' [-Wunused-parameter] AdunGRFNonbondedTerm.m: In function '-[AdGRFNonbondedTerm copyWithZone:]': AdunGRFNonbondedTerm.m:848:1: warning: unused parameter 'aZone' [-Wunused-parameter] gcc AdunShiftedNonbondedTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunShiftedNonbondedTerm.m.o In file included from ../../Base/AdForceFieldFunctions.h:33:0, from ../Headers/AdunKernel/AdunShiftedNonbondedTerm.h:26, from AdunShiftedNonbondedTerm.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunShiftedNonbondedTerm.m: In function '-[AdShiftedNonbondedTerm handlerDidUpdateList:]': AdunShiftedNonbondedTerm.m:495:1: warning: unused parameter 'handler' [-Wunused-parameter] AdunShiftedNonbondedTerm.m: In function '-[AdShiftedNonbondedTerm handlerDidInvalidateList:]': AdunShiftedNonbondedTerm.m:500:1: warning: unused parameter 'handler' [-Wunused-parameter] AdunShiftedNonbondedTerm.m: In function '-[AdShiftedNonbondedTerm handlerDidHandleContentChange:]': AdunShiftedNonbondedTerm.m:505:1: warning: unused parameter 'handler' [-Wunused-parameter] AdunShiftedNonbondedTerm.m: In function '-[AdShiftedNonbondedTerm copyWithZone:]': AdunShiftedNonbondedTerm.m:795:1: warning: unused parameter 'aZone' [-Wunused-parameter] gcc AdunMultithreadedNonbondedTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunMultithreadedNonbondedTerm.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunNonbondedTerm.h:28, from ../Headers/AdunKernel/AdunMultithreadedNonbondedTerm.h:24, from AdunMultithreadedNonbondedTerm.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunMultithreadedNonbondedTerm.m: In function '-[AdMultithreadedNonbondedTerm _dividePairs:]': AdunMultithreadedNonbondedTerm.m:130:7: warning: unused variable 'forward' [-Wunused-variable] AdunMultithreadedNonbondedTerm.m: In function '-[AdMultithreadedNonbondedTerm evaluateForces]': AdunMultithreadedNonbondedTerm.m:295:5: warning: unused variable 'threadedObj' [-Wunused-variable] AdunMultithreadedNonbondedTerm.m:293:15: warning: unused variable 'finishedThreads' [-Wunused-variable] AdunMultithreadedNonbondedTerm.m: In function '-[AdMultithreadedNonbondedTerm updateTerms]': AdunMultithreadedNonbondedTerm.m:327:5: warning: unused variable 'threadedObj' [-Wunused-variable] AdunMultithreadedNonbondedTerm.m:326:12: warning: unused variable 'forces1' [-Wunused-variable] AdunMultithreadedNonbondedTerm.m:325:15: warning: unused variable 'finishedThreads' [-Wunused-variable] AdunMultithreadedNonbondedTerm.m:325:12: warning: unused variable 'k' [-Wunused-variable] AdunMultithreadedNonbondedTerm.m:325:9: warning: unused variable 'j' [-Wunused-variable] AdunMultithreadedNonbondedTerm.m:325:6: warning: unused variable 'i' [-Wunused-variable] AdunMultithreadedNonbondedTerm.m: In function '-[AdNonbondedWorkerThreadManager init]': AdunMultithreadedNonbondedTerm.m:411:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunMultithreadedNonbondedTerm.m:406:5: warning: unused variable 'proxy' [-Wunused-variable] AdunMultithreadedNonbondedTerm.m:404:21: warning: unused variable 'receivePort' [-Wunused-variable] AdunMultithreadedNonbondedTerm.m:404:10: warning: unused variable 'sendPort' [-Wunused-variable] AdunMultithreadedNonbondedTerm.m: In function '-[AdWorkerThread initWithThreadManager:]': AdunMultithreadedNonbondedTerm.m:576:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunMultithreadedNonbondedTerm.m: In function '-[AdWorkerThread handlePortMessage:]': AdunMultithreadedNonbondedTerm.m:636:1: warning: unused parameter 'portMessage' [-Wunused-parameter] gcc AdunSmoothedGBTerm.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSmoothedGBTerm.m.o In file included from ../Headers/AdunKernel/AdunSmoothedGBTerm.h:27:0, from AdunSmoothedGBTerm.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm initWithSystem:nonbondedTerm:smoothingLength:solventPermittivity:tensionCoefficient:]': AdunSmoothedGBTerm.m:72:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunSmoothedGBTerm.m:78:25: warning: operation on 'self->totalPairESTPotential' may be undefined [-Wsequence-point] AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm _handleSystemContentsChange:]': AdunSmoothedGBTerm.m:181:1: warning: unused parameter 'aNotification' [-Wunused-parameter] AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm calculateBornRadii]': AdunSmoothedGBTerm.m:243:20: warning: unused variable 'end' [-Wunused-variable] AdunSmoothedGBTerm.m:243:13: warning: unused variable 'start' [-Wunused-variable] AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm(AdForceFieldTermMethods) evaluateForces]': AdunSmoothedGBTerm.m:300:29: warning: unused variable 'separation' [-Wunused-variable] AdunSmoothedGBTerm.m:300:19: warning: unused variable 'valueTwo' [-Wunused-variable] AdunSmoothedGBTerm.m:300:9: warning: unused variable 'valueOne' [-Wunused-variable] AdunSmoothedGBTerm.m:298:15: warning: unused variable 'atomTwo' [-Wunused-variable] AdunSmoothedGBTerm.m:298:6: warning: unused variable 'atomOne' [-Wunused-variable] AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm(AdForceFieldTermMethods) setExternalForceMatrix:]': AdunSmoothedGBTerm.m:415:1: warning: unused parameter 'matrix' [-Wunused-parameter] AdunSmoothedGBTerm.m: In function '-[AdSmoothedGBTerm(AdForceFieldTermMethods) setSystem:]': AdunSmoothedGBTerm.m:425:1: warning: unused parameter 'system' [-Wunused-parameter] gcc AdGBSWTermIntegrationMethods.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdGBSWTermIntegrationMethods.m.o In file included from ../Headers/AdunKernel/AdunSmoothedGBTerm.h:27:0, from AdGBSWTermIntegrationMethods.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdGBSWTermIntegrationMethods.m: In function '-[AdSmoothedGBTerm(LookupTableMethods) _createLookupTable]': AdGBSWTermIntegrationMethods.m:270:18: warning: unused variable 'gridCutSquared' [-Wunused-variable] AdGBSWTermIntegrationMethods.m:267:17: warning: unused variable 'atomIndex' [-Wunused-variable] gcc AdGBSWTermBornRadiiMethods.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdGBSWTermBornRadiiMethods.m.o In file included from ../Headers/AdunKernel/AdunSmoothedGBTerm.h:27:0, from AdGBSWTermBornRadiiMethods.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdGBSWTermBornRadiiMethods.m: In function '-[AdSmoothedGBTerm(BornRadiusMethods) _calculateOptimisedAtomicRadii:]': AdGBSWTermBornRadiiMethods.m:180:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdGBSWTermBornRadiiMethods.m: In function '-[AdSmoothedGBTerm(BornRadiusMethods) _initBornRadiiVariables]': AdGBSWTermBornRadiiMethods.m:216:22: warning: unused variable 'paramsTwo' [-Wunused-variable] AdGBSWTermBornRadiiMethods.m:216:10: warning: unused variable 'paramsOne' [-Wunused-variable] AdGBSWTermBornRadiiMethods.m:215:6: warning: unused variable 'i' [-Wunused-variable] AdGBSWTermBornRadiiMethods.m: In function '-[AdSmoothedGBTerm(BornRadiusDerivative) _calculateDerivativesWithRespectToAtom:]': AdGBSWTermBornRadiiMethods.m:571:42: warning: unused variable 'index' [-Wunused-variable] AdGBSWTermBornRadiiMethods.m: In function 'AdPrivateVEF': AdGBSWTermBornRadiiMethods.m:890:28: warning: unused variable 'checkVal' [-Wunused-variable] AdGBSWTermBornRadiiMethods.m:890:9: warning: unused variable 'smoothingBoundary' [-Wunused-variable] AdGBSWTermBornRadiiMethods.m:889:9: warning: unused variable 'j' [-Wunused-variable] gcc AdunForceField.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunForceField.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunForceField.h:30, from AdunForceField.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField initWithSystem:]': AdunForceField.m:27:1: warning: unused parameter 'system' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField evaluateForcesDueToElements:]': AdunForceField.m:40:1: warning: unused parameter 'elementIndexes' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField forces]': AdunForceField.m:53:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunForceField.m: In function '-[AdForceField totalEnergy]': AdunForceField.m:69:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunForceField.m: In function '-[AdForceField evaluateEnergiesUsingInteractionsInvolvingElements:]': AdunForceField.m:80:1: warning: unused parameter 'elementIndexes' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField system]': AdunForceField.m:93:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunForceField.m: In function '-[AdForceField setSystem:]': AdunForceField.m:96:1: warning: unused parameter 'object' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField arrayOfEnergiesForTerms:notFoundMarker:]': AdunForceField.m:109:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunForceField.m:104:1: warning: unused parameter 'terms' [-Wunused-parameter] AdunForceField.m:104:1: warning: unused parameter 'anObject' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField dictionaryOfEnergiesForTerms:]': AdunForceField.m:117:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunForceField.m:112:1: warning: unused parameter 'array' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField availableTerms]': AdunForceField.m:125:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunForceField.m: In function '-[AdForceField activatedTerms]': AdunForceField.m:133:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunForceField.m: In function '-[AdForceField deactivatedTerms]': AdunForceField.m:141:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunForceField.m: In function '-[AdForceField addCustomTerm:withName:]': AdunForceField.m:144:1: warning: unused parameter 'object' [-Wunused-parameter] AdunForceField.m:144:1: warning: unused parameter 'name' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField addCustomTerms:]': AdunForceField.m:152:1: warning: unused parameter 'aDict' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField removeCustomTermWithName:]': AdunForceField.m:160:1: warning: unused parameter 'name' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField deactivateTerm:]': AdunForceField.m:168:1: warning: unused parameter 'termName' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField deactivateTermsWithNames:]': AdunForceField.m:176:1: warning: unused parameter 'names' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField activateTerm:]': AdunForceField.m:184:1: warning: unused parameter 'termName' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField activateTermsWithNames:]': AdunForceField.m:192:1: warning: unused parameter 'names' [-Wunused-parameter] AdunForceField.m: In function '-[AdForceField accelerations]': AdunForceField.m:205:1: warning: no return statement in function returning non-void [-Wreturn-type] gcc AdunMolecularMechanicsForceField.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunMolecularMechanicsForceField.m.o In file included from ../Headers/AdunKernel/AdunMolecularMechanicsForceField.h:31:0, from AdunMolecularMechanicsForceField.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunMolecularMechanicsForceField.m: In function '+[AdMolecularMechanicsForceField classForForceField:]': AdunMolecularMechanicsForceField.m:135:3: warning: @interface of class 'AdEnzymixForceField' not found [enabled by default] AdunMolecularMechanicsForceField.m:140:3: warning: @interface of class 'AdEnzymixForceField' not found [enabled by default] AdunMolecularMechanicsForceField.m:142:3: warning: @interface of class 'AdCharmmForceField' not found [enabled by default] AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField initWithSystem:nonbondedTerm:customTerms:]': AdunMolecularMechanicsForceField.m:185:1: warning: unused parameter 'system' [-Wunused-parameter] AdunMolecularMechanicsForceField.m:185:1: warning: unused parameter 'anObject' [-Wunused-parameter] AdunMolecularMechanicsForceField.m:185:1: warning: unused parameter 'aDict' [-Wunused-parameter] AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField evaluateForcesDueToElements:]': AdunMolecularMechanicsForceField.m:230:1: warning: unused parameter 'elementIndexes' [-Wunused-parameter] AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField evaluateEnergiesUsingInteractionsInvolvingElements:]': AdunMolecularMechanicsForceField.m:242:1: warning: unused parameter 'elementIndexes' [-Wunused-parameter] AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField evaluateFiniteDifferenceForcesForTerm:]': AdunMolecularMechanicsForceField.m:249:12: warning: unused variable 'coordinates' [-Wunused-variable] AdunMolecularMechanicsForceField.m:266:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunMolecularMechanicsForceField.m:248:1: warning: unused parameter 'term' [-Wunused-parameter] AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField arrayOfEnergiesForTerms:notFoundMarker:]': AdunMolecularMechanicsForceField.m:503:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField allTerms]': AdunMolecularMechanicsForceField.m:544:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField allEnergies]': AdunMolecularMechanicsForceField.m:563:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField description]': AdunMolecularMechanicsForceField.m:692:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunMolecularMechanicsForceField.m:710:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunMolecularMechanicsForceField.m:715:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunMolecularMechanicsForceField.m: In function '-[AdMolecularMechanicsForceField(PrivateInternals) _handleSystemContentsChange:]': AdunMolecularMechanicsForceField.m:944:1: warning: unused parameter 'aNotification' [-Wunused-parameter] gcc AdunEnzymixForceField.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunEnzymixForceField.m.o In file included from ../Headers/AdunKernel/AdunMolecularMechanicsForceField.h:31:0, from ../Headers/AdunKernel/AdunEnzymixForceField.h:27, from AdunEnzymixForceField.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunEnzymixForceField.m: At top level: AdunEnzymixForceField.m:358:1: warning: incomplete implementation of class 'AdEnzymixForceField' [enabled by default] AdunEnzymixForceField.m:358:1: warning: method definition for '-evaluateForcesDueToElements:' not found [enabled by default] gcc AdunAmberForceField.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunAmberForceField.m.o In file included from ../Headers/AdunKernel/AdunMolecularMechanicsForceField.h:31:0, from ../Headers/AdunKernel/AdunAmberForceField.h:25, from AdunAmberForceField.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunAmberForceField.m: At top level: AdunAmberForceField.m:342:1: warning: incomplete implementation of class 'AdAmberForceField' [enabled by default] AdunAmberForceField.m:342:1: warning: method definition for '-evaluateForcesDueToElements:' not found [enabled by default] gcc AdunCharmmForceField.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunCharmmForceField.m.o In file included from ../Headers/AdunKernel/AdunMolecularMechanicsForceField.h:31:0, from ../Headers/AdunKernel/AdunCharmmForceField.h:25, from AdunCharmmForceField.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunCharmmForceField.m: At top level: AdunCharmmForceField.m:546:1: warning: incomplete implementation of class 'AdCharmmForceField' [enabled by default] AdunCharmmForceField.m:546:1: warning: method definition for '-evaluateForcesDueToElements:' not found [enabled by default] gcc AdunForceFieldCollection.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunForceFieldCollection.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunForceField.h:30, from ../Headers/AdunKernel/AdunForceFieldCollection.h:25, from AdunForceFieldCollection.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunForceFieldCollection.m: In function '-[AdForceFieldCollection forceFieldsForSystems:]': AdunForceFieldCollection.m:151:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunForceFieldCollection.m:147:16: warning: unused variable 'forceField' [-Wunused-variable] gcc AdunConfigurationGenerator.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunConfigurationGenerator.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from AdunConfigurationGenerator.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator production:]': AdunConfigurationGenerator.m:128:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunConfigurationGenerator.m:125:1: warning: unused parameter 'error' [-Wunused-parameter] AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator restartFrom:error:]': AdunConfigurationGenerator.m:134:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunConfigurationGenerator.m:131:1: warning: unused parameter 'step' [-Wunused-parameter] AdunConfigurationGenerator.m:131:1: warning: unused parameter 'error' [-Wunused-parameter] AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator numberOfSteps]': AdunConfigurationGenerator.m:146:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator setNumberOfSteps:]': AdunConfigurationGenerator.m:149:1: warning: unused parameter 'aNumber' [-Wunused-parameter] AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator currentStep]': AdunConfigurationGenerator.m:158:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator systems]': AdunConfigurationGenerator.m:165:1: warning: no return statement in function returning non-void [-Wreturn-type] AdunConfigurationGenerator.m: In function '-[AdConfigurationGenerator forceFields]': AdunConfigurationGenerator.m:172:1: warning: no return statement in function returning non-void [-Wreturn-type] gcc AdunSimulator.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunSimulator.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../Headers/AdunKernel/AdunSimulator.h:26, from AdunSimulator.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunSimulator.m: In function '-[AdSimulator description]': AdunSimulator.m:154:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunSimulator.m: In function '-[AdSimulator _simulateFrom:to:]': AdunSimulator.m:168:12: warning: variable 'name' set but not used [-Wunused-but-set-variable] AdunSimulator.m: In function '-[AdSimulator production:]': AdunSimulator.m:398:2: warning: 'startDate' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc AdunMinimiser.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunMinimiser.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../Headers/AdunKernel/AdunMinimiser.h:27, from AdunMinimiser.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunMinimiser.m: In function '-[AdMinimiser dealloc]': AdunMinimiser.m:210:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunMinimiser.m: In function '-[AdMinimiser production:]': AdunMinimiser.m:227:1: warning: unused parameter 'error' [-Wunused-parameter] AdunMinimiser.m: In function '-[AdMinimiser restartFrom:error:]': AdunMinimiser.m:354:1: warning: unused parameter 'step' [-Wunused-parameter] AdunMinimiser.m:354:1: warning: unused parameter 'error' [-Wunused-parameter] AdunMinimiser.m: In function '-[AdMinimiser setConstraints:forSystem:]': AdunMinimiser.m:499:11: warning: unused variable 'pointer' [-Wunused-variable] AdunMinimiser.m: In function '-[AdMinimiser(GSLWrappers) energyOfConfiguration:usingParameters:]': AdunMinimiser.m:656:1: warning: unused parameter 'params' [-Wunused-parameter] AdunMinimiser.m: In function '-[AdMinimiser(GSLWrappers) energyAndGradientOfConfiguration:usingParameters:energyBuffer:gradientBuffer:]': AdunMinimiser.m:741:9: warning: unused variable 'value' [-Wunused-variable] AdunMinimiser.m:738:1: warning: unused parameter 'params' [-Wunused-parameter] gcc AdunBerendsenThermostat.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunBerendsenThermostat.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../Headers/AdunKernel/AdunSimulator.h:26, from ../Headers/AdunKernel/AdunBerendsenThermostat.h:3, from AdunBerendsenThermostat.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat _removeTranslationalDOF]': AdunBerendsenThermostat.m:14:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulator:willBeginProductionWithSystems:forceFields:]': AdunBerendsenThermostat.m:136:9: warning: unused variable 'difference' [-Wunused-variable] AdunBerendsenThermostat.m:135:1: warning: unused parameter 'aForceFieldCollection' [-Wunused-parameter] AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorWillPerformFirstVelocityUpdateForSystem:]': AdunBerendsenThermostat.m:278:1: warning: unused parameter 'aSystem' [-Wunused-parameter] AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorWillPerformPositionUpdateForSystem:]': AdunBerendsenThermostat.m:283:1: warning: unused parameter 'aSystem' [-Wunused-parameter] AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorDidPerformPositionUpdateForSystem:]': AdunBerendsenThermostat.m:288:1: warning: unused parameter 'aSystem' [-Wunused-parameter] AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorWillPerformSecondVelocityUpdateForSystem:]': AdunBerendsenThermostat.m:293:1: warning: unused parameter 'aSystem' [-Wunused-parameter] AdunBerendsenThermostat.m: In function '-[AdBerendsenThermostat simulatorDidFinishProduction:]': AdunBerendsenThermostat.m:298:1: warning: unused parameter 'aSimulator' [-Wunused-parameter] gcc AdunLangevinThermostat.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunLangevinThermostat.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../Headers/AdunKernel/AdunSimulator.h:26, from ../Headers/AdunKernel/AdunLangevinThermostat.h:30, from AdunLangevinThermostat.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunLangevinThermostat.m: In function '-[AdLangevinThermostat _destroySystemForceMatricesAndMassArrays]': AdunLangevinThermostat.m:119:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunLangevinThermostat.m: In function '-[AdLangevinThermostat _removeTranslationalDOF]': AdunLangevinThermostat.m:140:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulator:willBeginProductionWithSystems:forceFields:]': AdunLangevinThermostat.m:231:1: warning: unused parameter 'aForceFieldCollection' [-Wunused-parameter] AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulatorDidFinishProduction:]': AdunLangevinThermostat.m:250:1: warning: unused parameter 'aSimulator' [-Wunused-parameter] AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulatorWillPerformPositionUpdateForSystem:]': AdunLangevinThermostat.m:287:1: warning: unused parameter 'aSystem' [-Wunused-parameter] AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulatorDidPerformPositionUpdateForSystem:]': AdunLangevinThermostat.m:292:1: warning: unused parameter 'aSystem' [-Wunused-parameter] AdunLangevinThermostat.m: In function '-[AdLangevinThermostat simulatorWillPerformSecondVelocityUpdateForSystem:]': AdunLangevinThermostat.m:297:1: warning: unused parameter 'aSystem' [-Wunused-parameter] gcc AdunMemoryManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/Framework.obj/AdunMemoryManager.m.o AdunMemoryManager.m: In function '-[AdMemoryManager freeDoubleMatrix:withRows:]': AdunMemoryManager.m:284:1: warning: unused parameter 'no_rows' [-Wunused-parameter] gcc -nostdlib -r -rdynamic -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./obj/subproject.o obj/Framework.obj/AdFrameworkFunctions.m.o obj/Framework.obj/AdIndexSetConversions.m.o obj/Framework.obj/AdunTimer.m.o obj/Framework.obj/AdunModelObject.m.o obj/Framework.obj/AdunMatrixStructureCoder.m.o obj/Framework.obj/AdunDataMatrix.m.o obj/Framework.obj/AdunDataSet.m.o obj/Framework.obj/AdunDataSource.m.o obj/Framework.obj/AdunContainerDataSource.m.o obj/Framework.obj/AdunElementSelection.m.o obj/Framework.obj/AdunGrid.m.o obj/Framework.obj/AdunSphericalBox.m.o obj/Framework.obj/AdunEllipsoidBox.m.o obj/Framework.obj/AdunCuboidBox.m.o obj/Framework.obj/AdunMoleculeCavity.m.o obj/Framework.obj/AdunCellListHandler.m.o obj/Framework.obj/AdunSimpleListHandler.m.o obj/Framework.obj/AdunLinkedList.m.o obj/Framework.obj/AdunListHandler.m.o obj/Framework.obj/AdunDynamics.m.o obj/Framework.obj/AdunInteractionSystem.m.o obj/Framework.obj/AdunSystem.m.o obj/Framework.obj/AdunSystemCollection.m.o obj/Framework.obj/AdunHarmonicConstraintTerm.m.o obj/Framework.obj/AdunSCAAS.m.o obj/Framework.obj/AdunNonbondedTerm.m.o obj/Framework.obj/AdunPureNonbondedTerm.m.o obj/Framework.obj/AdunGRFNonbondedTerm.m.o obj/Framework.obj/AdunShiftedNonbondedTerm.m.o obj/Framework.obj/AdunMultithreadedNonbondedTerm.m.o obj/Framework.obj/AdunSmoothedGBTerm.m.o obj/Framework.obj/AdGBSWTermIntegrationMethods.m.o obj/Framework.obj/AdGBSWTermBornRadiiMethods.m.o obj/Framework.obj/AdunForceField.m.o obj/Framework.obj/AdunMolecularMechanicsForceField.m.o obj/Framework.obj/AdunEnzymixForceField.m.o obj/Framework.obj/AdunAmberForceField.m.o obj/Framework.obj/AdunCharmmForceField.m.o obj/Framework.obj/AdunForceFieldCollection.m.o obj/Framework.obj/AdunConfigurationGenerator.m.o obj/Framework.obj/AdunSimulator.m.o obj/Framework.obj/AdunMinimiser.m.o obj/Framework.obj/AdunBerendsenThermostat.m.o obj/Framework.obj/AdunLangevinThermostat.m.o obj/Framework.obj/AdunMemoryManager.m.o ; make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' make[3]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all in subprojects of subproject CoreAdditions... make[4]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for subproject CoreCommands... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/CoreCommands.obj/ gcc AdStatusCommand.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../../../ -I../../Headers/ -I../ -I/usr/local/include -I./../../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreCommands.obj/AdStatusCommand.m.o In file included from ../../Headers/AdunKernel/AdunListHandler.h:26:0, from ../../Headers/AdunKernel/AdunSystem.h:29, from ../../Headers/AdunKernel/AdunSystemCollection.h:25, from ../../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../../Headers/AdunKernel/AdunCore.h:28, from ../Commands/AdStatusCommand.h:25, from AdStatusCommand.m:22: ../../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdStatusCommand.m: In function '-[AdCore(AdStatusCommand) status:]': AdStatusCommand.m:27:1: warning: unused parameter 'options' [-Wunused-parameter] gcc AdEndSimulationCommand.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../../../ -I../../Headers/ -I../ -I/usr/local/include -I./../../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreCommands.obj/AdEndSimulationCommand.m.o In file included from ../../Headers/AdunKernel/AdunListHandler.h:26:0, from ../../Headers/AdunKernel/AdunSystem.h:29, from ../../Headers/AdunKernel/AdunSystemCollection.h:25, from ../../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../../Headers/AdunKernel/AdunCore.h:28, from ../Commands/AdEndSimulationCommand.h:25, from AdEndSimulationCommand.m:23: ../../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdEndSimulationCommand.m: In function '-[AdCore(AdEndSimulationCommand) endSimulation:]': AdEndSimulationCommand.m:28:1: warning: unused parameter 'options' [-Wunused-parameter] gcc -nostdlib -r -rdynamic -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./obj/subproject.o obj/CoreCommands.obj/AdStatusCommand.m.o obj/CoreCommands.obj/AdEndSimulationCommand.m.o ; make[4]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making all for subproject CoreAdditions... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/CoreAdditions.obj/ gcc AdunTemplateProcessor.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunTemplateProcessor.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunKernel.h:25, from ../Headers/AdunKernel/AdunTemplateProcessor.h:25, from AdunTemplateProcessor.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunTemplateProcessor.m: In function '-[AdTemplateProcessor validateTemplate:error:]': AdunTemplateProcessor.m:344:54: warning: comparison between pointer and integer [enabled by default] gcc AdunController.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunController.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunKernel.h:25, from ../Headers/AdunKernel/AdunController.h:26, from AdunController.m:23: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunController.m: In function '-[AdController runController]': AdunController.m:319:23: warning: unused variable 'dict' [-Wunused-variable] AdunController.m: In function '-[AdController(AdControllerThreadingExtensions) stopSimulation:]': AdunController.m:507:1: warning: unused parameter 'core' [-Wunused-parameter] AdunController.m: In function '-[AdController(AdControllerThreadingExtensions) terminateSimulation:]': AdunController.m:513:1: warning: unused parameter 'core' [-Wunused-parameter] gcc AdunIOManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunIOManager.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunIOManager.h:32, from AdunIOManager.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunIOManager.m: In function '-[AdIOManager processCommandLine:]': AdunIOManager.m:328:30: warning: variable 'invalidArgs' set but not used [-Wunused-but-set-variable] AdunIOManager.m: In function '-[AdIOManager loadData:]': AdunIOManager.m:699:33: warning: unused variable 'readModeStorage' [-Wunused-variable] AdunIOManager.m:698:27: warning: unused variable 'dataDirectory' [-Wunused-variable] AdunIOManager.m:698:12: warning: unused variable 'templateFile' [-Wunused-variable] AdunIOManager.m: In function '-[AdIOManager closeAllStreams]': AdunIOManager.m:1215:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunIOManager.m: In function '-[AdIOManager(SimulationDataLoading) _loadRestartData:]': AdunIOManager.m:1361:16: warning: unused variable 'systemEnum' [-Wunused-variable] AdunIOManager.m:1358:6: warning: variable 'numberOfFrames' set but not used [-Wunused-but-set-variable] gcc AdunFileSystemSimulationStorage.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunFileSystemSimulationStorage.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunFileSystemSimulationStorage.h:25, from AdunFileSystemSimulationStorage.m:1: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunFileSystemSimulationStorage.m: In function '-[AdFileSystemSimulationStorage _loadTrajectoryFrame:]': AdunFileSystemSimulationStorage.m:218:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AdunFileSystemSimulationStorage.m: In function '-[AdFileSystemSimulationStorage _checkStorage]': AdunFileSystemSimulationStorage.m:283:7: warning: unused variable 'isDirectory' [-Wunused-variable] gcc AdunSimulationData.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunSimulationData.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSimulationData.h:31, from AdunSimulationData.m:23: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunSimulationData.m: In function '-[AdSimulationData numberOfFramesForSystem:]': AdunSimulationData.m:482:1: warning: unused parameter 'system' [-Wunused-parameter] AdunSimulationData.m: In function '-[AdSimulationDataWriter initWithDataStorage:systems:forceFields:iterationHeader:]': AdunSimulationData.m:573:22: warning: variable 'storedSystemCollection' set but not used [-Wunused-but-set-variable] AdunSimulationData.m: In function '-[AdSimulationDataWriter _addEnergyCheckpoint]': AdunSimulationData.m:818:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunSimulationData.m:826:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc AdunTrajectory.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunTrajectory.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunTrajectory.h:31, from AdunTrajectory.m:23: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunTrajectory.m: In function '-[AdTrajectory(DataLoadingMethods) setDataStorage:]': AdunTrajectory.m:146:12: warning: unused variable 'dataId' [-Wunused-variable] AdunTrajectory.m:145:9: warning: unused variable 'size' [-Wunused-variable] AdunTrajectory.m: In function '-[AdTrajectory compareCheckpointsForSystem:inTrajectory:toSystem:range:]': AdunTrajectory.m:234:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AdunTrajectory.m: In function '-[AdMutableTrajectory initWithLocation:systems:forceFields:iterationHeader:error:]': AdunTrajectory.m:587:22: warning: variable 'storedSystemCollection' set but not used [-Wunused-but-set-variable] AdunTrajectory.m:586:16: warning: unused variable 'dataReader' [-Wunused-variable] AdunTrajectory.m:585:33: warning: unused variable 'tempStorage' [-Wunused-variable] AdunTrajectory.m: In function '-[AdMutableTrajectory _addEnergyCheckpoint]': AdunTrajectory.m:860:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunTrajectory.m:868:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] AdunTrajectory.m: At top level: AdunTrajectory.m:1268:1: warning: incomplete implementation of class 'AdMutableTrajectory' [enabled by default] AdunTrajectory.m:1268:1: warning: method definition for '-updateSystems' not found [enabled by default] gcc AdunCheckpointManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunCheckpointManager.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdFrameworkFunctions.h:6, from ../Headers/AdunKernel/AdunFileSystemSimulationStorage.h:25, from ../Headers/AdunKernel/AdunCheckpointManager.h:24, from AdunCheckpointManager.m:22: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunCheckpointManager.m: In function '-[AdCheckpointManager(PrivateInternals) handleProductionStart:]': AdunCheckpointManager.m:398:1: warning: unused parameter 'notification' [-Wunused-parameter] gcc AdunCore.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I../ -I../../ -I../Headers -I/usr/local/include -I./../derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/CoreAdditions.obj/AdunCore.m.o In file included from ../Headers/AdunKernel/AdunListHandler.h:26:0, from ../Headers/AdunKernel/AdunSystem.h:29, from ../Headers/AdunKernel/AdunSystemCollection.h:25, from ../Headers/AdunKernel/AdunConfigurationGenerator.h:28, from ../Headers/AdunKernel/AdunCore.h:28, from AdunCore.m:24: ../../Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ../../Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] AdunCore.m: In function '-[AdCore main:]': AdunCore.m:408:1: warning: unused parameter 'dict' [-Wunused-parameter] AdunCore.m: In function '-[AdCore flushEnergies:]': AdunCore.m:519:1: warning: unused parameter 'aDict' [-Wunused-parameter] AdunCore.m: In function '-[AdCore controllerResults:]': AdunCore.m:525:1: warning: unused parameter 'options' [-Wunused-parameter] AdunCore.m: In function '-[AdCore(AdCoreInteractionModeExtensions) simulationFinished:]': AdunCore.m:647:1: warning: unused parameter 'aNotification' [-Wunused-parameter] gcc -nostdlib -r -rdynamic -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./obj/subproject.o obj/CoreAdditions.obj/AdunTemplateProcessor.m.o obj/CoreAdditions.obj/AdunController.m.o obj/CoreAdditions.obj/AdunIOManager.m.o obj/CoreAdditions.obj/AdunFileSystemSimulationStorage.m.o obj/CoreAdditions.obj/AdunSimulationData.m.o obj/CoreAdditions.obj/AdunTrajectory.m.o obj/CoreAdditions.obj/AdunCheckpointManager.m.o obj/CoreAdditions.obj/AdunCore.m.o Commands/obj/subproject.o ; make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making all for framework AdunKernel... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/AdunKernel.obj/ classes=""; \ for object_file in ./Framework//obj/subproject.o ./CoreAdditions//obj/subproject.o __dummy__; do \ if [ "$object_file" != "__dummy__" ]; then \ sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \ classes="$classes $sym"; \ fi; \ done; \ classlist=""; \ classarray=""; \ for f in $classes __dummy__ ; do \ if [ "$f" != "__dummy__" ]; then \ if [ "$classlist" = "" ]; then \ classlist="@\"$f\""; \ classarray="(\"$f\""; \ else \ classlist="$classlist, @\"$f\""; \ classarray="$classarray, \"$f\""; \ fi; \ fi; \ done; \ if [ "$classlist" = "" ]; then \ classlist="NULL"; \ classarray="()"; \ else \ classlist="$classlist, NULL"; \ classarray="$classarray)"; \ fi; \ echo "$classarray" > ./derived_src/AdunKernel-class-list; \ echo "#include " > derived_src/NSFramework_AdunKernel.m; \ echo "@interface NSFramework_AdunKernel" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *)frameworkEnv;" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *)frameworkPath;" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_AdunKernel.m; \ echo "@end" >> derived_src/NSFramework_AdunKernel.m; \ echo "@implementation NSFramework_AdunKernel" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *)frameworkEnv { return nil; }" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *)frameworkPath { return @\"/tmp/buildd/GNUstep/Library/Frameworks\"; }" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *)frameworkVersion { return @\"0\"; }" >> derived_src/NSFramework_AdunKernel.m; \ echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_AdunKernel.m; \ echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_AdunKernel.m;\ echo "@end" >> derived_src/NSFramework_AdunKernel.m gcc derived_src/NSFramework_AdunKernel.m -c -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -std=gnu89 -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -I/usr/local/include -I/usr/local/include -I./Headers -I. -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep -o obj/AdunKernel.obj/NSFramework_AdunKernel.o \ gcc -shared -Wl,-soname,libAdunKernel.so.0 -rdynamic -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./AdunKernel.framework/Versions/0/./libAdunKernel.so.0.13 obj/AdunKernel.obj/NSFramework_AdunKernel.o Framework//obj/subproject.o CoreAdditions//obj/subproject.o -L/usr/local/lib -L../Base/./obj -L/usr/local/lib -L/usr/local/lib -L/usr/lib -ladun_base -lgsl -lgslcblas -lm -lgnustep-base -lobjc && (cd ./AdunKernel.framework/Versions/0/.; rm -f libAdunKernel.so; if [ "libAdunKernel.so.0" != "libAdunKernel.so.0.13" ]; then rm -f libAdunKernel.so.0; ln -s libAdunKernel.so.0.13 libAdunKernel.so.0; fi; ln -s libAdunKernel.so.0 libAdunKernel.so; ) || rm -f ./AdunKernel.framework/Versions/0/./libAdunKernel.so.0.13 ; \ (cd ./AdunKernel.framework/Versions/0/.; \ rm -f AdunKernel; \ ln -s libAdunKernel.so AdunKernel) \ for f in Resources/ScriptingInfo.plist Resources/GBSWData/; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./AdunKernel.framework/Versions/0/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done for subproject in Framework/ CoreAdditions/; do \ if [ -d $subproject/Resources/Subproject ]; then \ for f in $subproject/Resources/Subproject/*; do \ if [ $f != $subproject'/Resources/Subproject/*' ]; then \ cp -fr $f ./AdunKernel.framework/Versions/0/Resources/; \ fi; \ done; \ fi; \ done (echo "{"; echo ' NOTE = "Automatically generated, do not edit!";'; \ echo " NSExecutable = \"AdunKernel\";"; \ echo " NSMainNibFile = \"\";"; \ echo " NSPrincipalClass = \"AdunKernel\";"; \ echo " Classes = "; \ cat ./derived_src/AdunKernel-class-list; \ echo " ;"; \ echo "}") >AdunKernel.framework/Versions/0/Resources/Info-gnustep.plist if [ -r "AdunKernelInfo.plist" ]; then \ plmerge AdunKernel.framework/Versions/0/Resources/Info-gnustep.plist AdunKernelInfo.plist; \ fi cd ./AdunKernel.framework/.; \ rm -f AdunKernel libAdunKernel.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./AdunKernel short` \ AdunKernel; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libAdunKernel.so short` \ libAdunKernel.so make[2]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj /usr/share/GNUstep/Makefiles/mkinstalldirs Resources Making all for tool AdunCore... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/AdunCore.obj/ gcc main.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -W -O3 -fconstant-string-class=NSConstantString -std=gnu89 -fconstant-string-class=NSConstantString -IComponents/ -IFramework/ -IAdunKernel/Headers -I/usr/local/include -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/AdunCore.obj/main.m.o In file included from AdunKernel/Headers/AdunKernel/AdunListHandler.h:26:0, from AdunKernel/Headers/AdunKernel/AdunSystem.h:29, from AdunKernel/Headers/AdunKernel/AdFrameworkFunctions.h:6, from AdunKernel/Headers/AdunKernel/AdunKernel.h:25, from AdunKernel/Headers/AdunKernel/AdunController.h:26, from main.m:12: ./Base/AdLinkedList.h: In function 'AdUnsafeLinkedListAdd': ./Base/AdLinkedList.h:70:90: warning: unused parameter 'index' [-Wunused-parameter] main.m: In function 'registerDefaults': main.m:185:33: warning: unused parameter 'error' [-Wunused-parameter] main.m: In function 'main': main.m:222:14: warning: unused variable 'fileName' [-Wunused-variable] main.m:222:5: warning: unused variable 'results' [-Wunused-variable] main.m:213:14: warning: unused parameter 'argc' [-Wunused-parameter] main.m:213:27: warning: unused parameter 'argv' [-Wunused-parameter] gcc -rdynamic -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -fgnu-runtime -o obj/AdunCore \ ./obj/AdunCore.obj/main.m.o \ -L/usr/local/lib -LBase/./obj -LAdunKernel/AdunKernel.framework/Versions/Current -L/opt/intel/lib -L/usr/local/lib -L/usr/lib -lAdunKernel -ladun_base -lgnustep-base -lpthread -lobjc -lm /usr/share/GNUstep/Makefiles/mkinstalldirs Resources/AdunCore make[1]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel' Making all in MolTalk/ ... make[1]: Entering directory `/tmp/buildd/adun.app-0.81/MolTalk' Making build-headers for framework MolTalk... /usr/share/GNUstep/Makefiles/mkinstalldirs MolTalk.framework/Versions/3/Headers /usr/bin/install -c -p -m 644 MolTalk.h MolTalk.framework/Versions/3/Headers/MolTalk.h /usr/bin/install -c -p -m 644 MTAtom.h MolTalk.framework/Versions/3/Headers/MTAtom.h /usr/bin/install -c -p -m 644 MTAlPos.h MolTalk.framework/Versions/3/Headers/MTAlPos.h /usr/bin/install -c -p -m 644 MTChain.h MolTalk.framework/Versions/3/Headers/MTChain.h /usr/bin/install -c -p -m 644 MTCoordinates.h MolTalk.framework/Versions/3/Headers/MTCoordinates.h /usr/bin/install -c -p -m 644 MTResidue.h MolTalk.framework/Versions/3/Headers/MTResidue.h /usr/bin/install -c -p -m 644 MTSelection.h MolTalk.framework/Versions/3/Headers/MTSelection.h /usr/bin/install -c -p -m 644 MTStructure.h MolTalk.framework/Versions/3/Headers/MTStructure.h /usr/bin/install -c -p -m 644 MTString.h MolTalk.framework/Versions/3/Headers/MTString.h /usr/bin/install -c -p -m 644 MTStream.h MolTalk.framework/Versions/3/Headers/MTStream.h /usr/bin/install -c -p -m 644 MTFileStream.h MolTalk.framework/Versions/3/Headers/MTFileStream.h /usr/bin/install -c -p -m 644 MTCompressedFileStream.h MolTalk.framework/Versions/3/Headers/MTCompressedFileStream.h /usr/bin/install -c -p -m 644 MTMatrix53.h MolTalk.framework/Versions/3/Headers/MTMatrix53.h /usr/bin/install -c -p -m 644 MTMatrix44.h MolTalk.framework/Versions/3/Headers/MTMatrix44.h /usr/bin/install -c -p -m 644 MTMatrix.h MolTalk.framework/Versions/3/Headers/MTMatrix.h /usr/bin/install -c -p -m 644 MTVector.h MolTalk.framework/Versions/3/Headers/MTVector.h /usr/bin/install -c -p -m 644 MTPairwiseStrxAlignment.h MolTalk.framework/Versions/3/Headers/MTPairwiseStrxAlignment.h /usr/bin/install -c -p -m 644 MTPairwiseSequenceAlignment.h MolTalk.framework/Versions/3/Headers/MTPairwiseSequenceAlignment.h /usr/bin/install -c -p -m 644 MTSubstitutionMatrix.h MolTalk.framework/Versions/3/Headers/MTSubstitutionMatrix.h /usr/bin/install -c -p -m 644 MTStructureFactory.h MolTalk.framework/Versions/3/Headers/MTStructureFactory.h /usr/bin/install -c -p -m 644 MTChainFactory.h MolTalk.framework/Versions/3/Headers/MTChainFactory.h /usr/bin/install -c -p -m 644 MTResidueFactory.h MolTalk.framework/Versions/3/Headers/MTResidueFactory.h /usr/bin/install -c -p -m 644 MTAtomFactory.h MolTalk.framework/Versions/3/Headers/MTAtomFactory.h /usr/bin/install -c -p -m 644 MTQuaternion.h MolTalk.framework/Versions/3/Headers/MTQuaternion.h /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs MolTalk.framework/Versions/3/Resources cd ./MolTalk.framework/Versions; \ rm -f Current; \ ln -s 3 Current cd ./MolTalk.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "MolTalk" ]; then \ rm -f ./MolTalk; \ ln -s ../MolTalk.framework/Headers \ ./MolTalk; \ fi cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for framework MolTalk... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/MolTalk.obj/ gcc MolTalk.c -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -pthread -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -D none -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MolTalk.c.o gcc MTAtom.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTAtom.m.o gcc MTAlPos.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTAlPos.m.o gcc MTChain.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTChain.m.o MTChain.m: In function '-[MTChain removeResidue:]': MTChain.m:488:12: warning: unused variable 'p_num' [-Wunused-variable] MTChain.m: In function '-[MTChain selectResiduesCloseTo:maxDistance:]': MTChain.m:633:15: warning: variable 'seq2' set but not used [-Wunused-but-set-variable] MTChain.m:633:8: warning: variable 'seq1' set but not used [-Wunused-but-set-variable] MTChain.m: In function '-[MTChain deepCopy]': MTChain.m:922:13: warning: unused variable 'prevres' [-Wunused-variable] MTChain.m: In function '-[MTChain deepCopyCA]': MTChain.m:997:13: warning: unused variable 'prevres' [-Wunused-variable] MTChain.m: In function '-[MTChain selectResiduesCloseTo:maxDistance:]': MTChain.m:727:10: warning: 'z1' may be used uninitialized in this function [-Wmaybe-uninitialized] MTChain.m:725:10: warning: 'y1' may be used uninitialized in this function [-Wmaybe-uninitialized] MTChain.m:723:10: warning: 'x1' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc privateMTChain.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/privateMTChain.m.o gcc MTCoordinates.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTCoordinates.m.o gcc MTResidue.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTResidue.m.o MTResidue.m: In function '-[MTResidue compare:]': MTResidue.m:156:1: warning: control reaches end of non-void function [-Wreturn-type] gcc privateMTResidue.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/privateMTResidue.m.o gcc MTSelection.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTSelection.m.o gcc privateMTSelection.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/privateMTSelection.m.o gcc MTStructure.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTStructure.m.o MTStructure.m: In function '-[MTStructure writePDBToStream:asModel:]': MTStructure.m:447:2: warning: unused variable 'poolinner' [-Wunused-variable] gcc privateMTStructure.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/privateMTStructure.m.o privateMTStructure.m: In function '-[MTStructure(Private) writePDBHeaderTo:]': privateMTStructure.m:230:33: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m:230:33: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m: In function '-[MTStructure(Private) writePDBConectResidue:to:]': privateMTStructure.m:414:33: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m:417:25: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m:417:25: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m: In function '-[MTStructure(Private) writePDBChain:to:fromSerial:]': privateMTStructure.m:470:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m:470:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m:472:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m:472:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m: In function '-[MTStructure(Private) writePDBResidue:inChain:to:fromSerial:]': privateMTStructure.m:534:9: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m:534:9: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m:549:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m:549:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m: In function '-[MTStructure(Private) writePDBHeterogen:inChain:to:fromSerial:]': privateMTStructure.m:635:9: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m:635:9: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m:650:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m:650:17: warning: ' ' flag used with '%u' gnu_printf format [-Wformat] privateMTStructure.m: In function '-[MTStructure(Private) backTransformation]': privateMTStructure.m:803:16: warning: unused variable 'tSINB' [-Wunused-variable] privateMTStructure.m:802:16: warning: unused variable 'tSINA' [-Wunused-variable] gcc MTString.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTString.m.o gcc MTStream.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTStream.m.o gcc MTFileStream.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTFileStream.m.o gcc MTCompressedFileStream.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTCompressedFileStream.m.o gcc MTMatrix53.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTMatrix53.m.o gcc MTMatrix44.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTMatrix44.m.o gcc MTMatrix.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTMatrix.m.o gcc privateMTMatrix.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/privateMTMatrix.m.o gcc MTVector.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTVector.m.o gcc MTPDBParser.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTPDBParser.m.o MTPDBParser.m: In function '-[MTPDBParser(Private) readAtom:]': MTPDBParser.m:523:15: warning: variable 'occ' set but not used [-Wunused-but-set-variable] MTPDBParser.m: In function '-[MTPDBParser(Private) readHetatom:]': MTPDBParser.m:711:15: warning: variable 'occ' set but not used [-Wunused-but-set-variable] MTPDBParser.m: In function '-[MTPDBParser(Private) readModres:]': MTPDBParser.m:1416:12: warning: variable 'hname' set but not used [-Wunused-but-set-variable] MTPDBParser.m: In function '-[MTPDBParser(Private) readAtom:]': MTPDBParser.m:561:8: warning: array subscript is above array bounds [-Warray-bounds] MTPDBParser.m:582:30: warning: array subscript is above array bounds [-Warray-bounds] MTPDBParser.m:635:61: warning: 'segid[3]' may be used uninitialized in this function [-Wuninitialized] MTPDBParser.m:638:4: warning: 'segid[2u]' may be used uninitialized in this function [-Wmaybe-uninitialized] MTPDBParser.m:638:4: warning: 'segid[1u]' may be used uninitialized in this function [-Wmaybe-uninitialized] MTPDBParser.m:638:4: warning: 'segid[0u]' may be used uninitialized in this function [-Wmaybe-uninitialized] MTPDBParser.m: In function '-[MTPDBParser(Private) readHetatom:]': MTPDBParser.m:787:30: warning: array subscript is above array bounds [-Warray-bounds] MTPDBParser.m:828:61: warning: 'segid[3]' may be used uninitialized in this function [-Wuninitialized] MTPDBParser.m:831:4: warning: 'segid[2u]' may be used uninitialized in this function [-Wmaybe-uninitialized] MTPDBParser.m:831:4: warning: 'segid[1u]' may be used uninitialized in this function [-Wmaybe-uninitialized] MTPDBParser.m:831:4: warning: 'segid[0u]' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc MTPairwiseStrxAlignment.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTPairwiseStrxAlignment.m.o MTPairwiseStrxAlignment.m: In function '-[MTPairwiseStrxAlignment optimize]': MTPairwiseStrxAlignment.m:244:17: warning: variable 'preverr' set but not used [-Wunused-but-set-variable] MTPairwiseStrxAlignment.m:236:6: warning: variable 'maxaligned' set but not used [-Wunused-but-set-variable] In file included from MTPairwiseStrxAlignment.m:41:0: MTPairwiseStrxAlignment.m: At top level: blosum45.h:2:14: warning: 'substitutionMatrixBlosum45' defined but not used [-Wunused-variable] In file included from MTPairwiseStrxAlignment.m:42:0: blosum62.h:1:14: warning: 'substitutionMatrixBlosum62' defined but not used [-Wunused-variable] In file included from MTPairwiseStrxAlignment.m:43:0: blosum80.h:1:14: warning: 'substitutionMatrixBlosum80' defined but not used [-Wunused-variable] gcc MTPairwiseSequenceAlignment.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTPairwiseSequenceAlignment.m.o MTPairwiseSequenceAlignment.m: In function '-[MTPairwiseSequenceAlignment writeFastaToStream:]': MTPairwiseSequenceAlignment.m:930:6: warning: 'strx' may be used uninitialized in this function [-Wmaybe-uninitialized] MTPairwiseSequenceAlignment.m:930:11: warning: 'ch' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc MTSubstitutionMatrix.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTSubstitutionMatrix.m.o gcc MTStructureFactory.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTStructureFactory.m.o gcc MTChainFactory.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTChainFactory.m.o gcc MTResidueFactory.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTResidueFactory.m.o gcc NSScanner+additions.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/NSScanner+additions.m.o gcc MTAtomFactory.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTAtomFactory.m.o gcc MTQuaternion.m -c \ -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/MolTalk.obj/MTQuaternion.m.o classes=""; \ for object_file in ./obj/MolTalk.obj/MTAtom.m.o ./obj/MolTalk.obj/MTAlPos.m.o ./obj/MolTalk.obj/MTChain.m.o ./obj/MolTalk.obj/privateMTChain.m.o ./obj/MolTalk.obj/MTCoordinates.m.o ./obj/MolTalk.obj/MTResidue.m.o ./obj/MolTalk.obj/privateMTResidue.m.o ./obj/MolTalk.obj/MTSelection.m.o ./obj/MolTalk.obj/privateMTSelection.m.o ./obj/MolTalk.obj/MTStructure.m.o ./obj/MolTalk.obj/privateMTStructure.m.o ./obj/MolTalk.obj/MTString.m.o ./obj/MolTalk.obj/MTStream.m.o ./obj/MolTalk.obj/MTFileStream.m.o ./obj/MolTalk.obj/MTCompressedFileStream.m.o ./obj/MolTalk.obj/MTMatrix53.m.o ./obj/MolTalk.obj/MTMatrix44.m.o ./obj/MolTalk.obj/MTMatrix.m.o ./obj/MolTalk.obj/privateMTMatrix.m.o ./obj/MolTalk.obj/MTVector.m.o ./obj/MolTalk.obj/MTPDBParser.m.o ./obj/MolTalk.obj/MTPairwiseStrxAlignment.m.o ./obj/MolTalk.obj/MTPairwiseSequenceAlignment.m.o ./obj/MolTalk.obj/MTSubstitutionMatrix.m.o ./obj/MolTalk.obj/MTStructureFactory.m.o ./obj/MolTalk.obj/MTChainFactory.m.o ./obj/MolTalk.obj/MTResidueFactory.m.o ./obj/MolTalk.obj/NSScanner+additions.m.o ./obj/MolTalk.obj/MTAtomFactory.m.o ./obj/MolTalk.obj/MTQuaternion.m.o __dummy__; do \ if [ "$object_file" != "__dummy__" ]; then \ sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \ classes="$classes $sym"; \ fi; \ done; \ classlist=""; \ classarray=""; \ for f in $classes __dummy__ ; do \ if [ "$f" != "__dummy__" ]; then \ if [ "$classlist" = "" ]; then \ classlist="@\"$f\""; \ classarray="(\"$f\""; \ else \ classlist="$classlist, @\"$f\""; \ classarray="$classarray, \"$f\""; \ fi; \ fi; \ done; \ if [ "$classlist" = "" ]; then \ classlist="NULL"; \ classarray="()"; \ else \ classlist="$classlist, NULL"; \ classarray="$classarray)"; \ fi; \ echo "$classarray" > ./derived_src/MolTalk-class-list; \ echo "#include " > derived_src/NSFramework_MolTalk.m; \ echo "@interface NSFramework_MolTalk" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *)frameworkEnv;" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *)frameworkPath;" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_MolTalk.m; \ echo "@end" >> derived_src/NSFramework_MolTalk.m; \ echo "@implementation NSFramework_MolTalk" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *)frameworkEnv { return nil; }" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *)frameworkPath { return @\"/tmp/buildd/GNUstep/Library/Frameworks\"; }" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *)frameworkVersion { return @\"3\"; }" >> derived_src/NSFramework_MolTalk.m; \ echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_MolTalk.m; \ echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_MolTalk.m;\ echo "@end" >> derived_src/NSFramework_MolTalk.m gcc derived_src/NSFramework_MolTalk.m -c -MMD -MP -DMT_VERSION=\"3.0.1\" -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -DUNSAFEENV -D none -fconstant-string-class=NSConstantString -march=athlon64 -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep -o obj/MolTalk.obj/NSFramework_MolTalk.o \ gcc -shared -Wl,-soname,libMolTalk.so.3 -rdynamic -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./MolTalk.framework/Versions/3/./libMolTalk.so.3.0.1 obj/MolTalk.obj/NSFramework_MolTalk.o obj/MolTalk.obj/MolTalk.c.o obj/MolTalk.obj/MTAtom.m.o obj/MolTalk.obj/MTAlPos.m.o obj/MolTalk.obj/MTChain.m.o obj/MolTalk.obj/privateMTChain.m.o obj/MolTalk.obj/MTCoordinates.m.o obj/MolTalk.obj/MTResidue.m.o obj/MolTalk.obj/privateMTResidue.m.o obj/MolTalk.obj/MTSelection.m.o obj/MolTalk.obj/privateMTSelection.m.o obj/MolTalk.obj/MTStructure.m.o obj/MolTalk.obj/privateMTStructure.m.o obj/MolTalk.obj/MTString.m.o obj/MolTalk.obj/MTStream.m.o obj/MolTalk.obj/MTFileStream.m.o obj/MolTalk.obj/MTCompressedFileStream.m.o obj/MolTalk.obj/MTMatrix53.m.o obj/MolTalk.obj/MTMatrix44.m.o obj/MolTalk.obj/MTMatrix.m.o obj/MolTalk.obj/privateMTMatrix.m.o obj/MolTalk.obj/MTVector.m.o obj/MolTalk.obj/MTPDBParser.m.o obj/MolTalk.obj/MTPairwiseStrxAlignment.m.o obj/MolTalk.obj/MTPairwiseSequenceAlignment.m.o obj/MolTalk.obj/MTSubstitutionMatrix.m.o obj/MolTalk.obj/MTStructureFactory.m.o obj/MolTalk.obj/MTChainFactory.m.o obj/MolTalk.obj/MTResidueFactory.m.o obj/MolTalk.obj/NSScanner+additions.m.o obj/MolTalk.obj/MTAtomFactory.m.o obj/MolTalk.obj/MTQuaternion.m.o -L/usr/local/lib -L/usr/lib -lm -lgnustep-base -lobjc && (cd ./MolTalk.framework/Versions/3/.; rm -f libMolTalk.so; if [ "libMolTalk.so.3" != "libMolTalk.so.3.0.1" ]; then rm -f libMolTalk.so.3; ln -s libMolTalk.so.3.0.1 libMolTalk.so.3; fi; ln -s libMolTalk.so.3 libMolTalk.so; ) || rm -f ./MolTalk.framework/Versions/3/./libMolTalk.so.3.0.1 ; \ (cd ./MolTalk.framework/Versions/3/.; \ rm -f MolTalk; \ ln -s libMolTalk.so MolTalk) \ for f in Resources/ScriptingInfo.plist; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./MolTalk.framework/Versions/3/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done (echo "{"; echo ' NOTE = "Automatically generated, do not edit!";'; \ echo " NSExecutable = \"MolTalk\";"; \ echo " NSMainNibFile = \"\";"; \ echo " NSPrincipalClass = \"MolTalk\";"; \ echo " Classes = "; \ cat ./derived_src/MolTalk-class-list; \ echo " ;"; \ echo "}") >MolTalk.framework/Versions/3/Resources/Info-gnustep.plist if [ -r "MolTalkInfo.plist" ]; then \ plmerge MolTalk.framework/Versions/3/Resources/Info-gnustep.plist MolTalkInfo.plist; \ fi cd ./MolTalk.framework/.; \ rm -f MolTalk libMolTalk.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./MolTalk short` \ MolTalk; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libMolTalk.so short` \ libMolTalk.so make[1]: Leaving directory `/tmp/buildd/adun.app-0.81/MolTalk' Making all in UL/ ... make[1]: Entering directory `/tmp/buildd/adun.app-0.81/UL' Making all in XMLLib ... make[2]: Entering directory `/tmp/buildd/adun.app-0.81/UL/XMLLib' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for library libXMLLib... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/libXMLLib.obj/ gcc XMLDocumentRoot.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/XMLDocumentRoot.m.o gcc XMLNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/XMLNode.m.o XMLNode.m: In function '-[XMLNode nextSibling]': XMLNode.m:153:2: warning: multiple methods named '-childCount' found [enabled by default] In file included from /usr/include/GNUstep/Foundation/NSXMLDocument.h:29:0, from /usr/include/GNUstep/Foundation/Foundation.h:132, from XMLNode.h:28, from XMLNode.m:25: /usr/include/GNUstep/Foundation/NSXMLNode.h:208:1: note: using '-(NSUInteger)childCount' /usr/include/GNUstep/Foundation/NSXMLNode.h:208:1: note: also found '-(NSUInteger)childCount' In file included from XMLNode.m:25:0: XMLNode.h:120:1: note: also found '-(int)childCount' gcc ULParameterNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULParameterNode.m.o gcc ULTopologyNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULTopologyNode.m.o gcc ULClassNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULClassNode.m.o gcc ULInteractionNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULInteractionNode.m.o gcc ULParameterTree.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULParameterTree.m.o gcc ULMolecularLibraryNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULMolecularLibraryNode.m.o gcc ULMoleculeClassNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULMoleculeClassNode.m.o gcc ULMoleculeNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULMoleculeNode.m.o gcc ULConnectivityNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULConnectivityNode.m.o gcc ULAtomListNode.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULAtomListNode.m.o gcc ULMolecularLibraryTree.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I../ -I../../Kernel -I../../Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/libXMLLib.obj/ULMolecularLibraryTree.m.o gcc -shared -Wl,-soname,libXMLLib.so.0 -rdynamic -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./obj/libXMLLib.so.0.1 obj/libXMLLib.obj/XMLDocumentRoot.m.o obj/libXMLLib.obj/XMLNode.m.o obj/libXMLLib.obj/ULParameterNode.m.o obj/libXMLLib.obj/ULTopologyNode.m.o obj/libXMLLib.obj/ULClassNode.m.o obj/libXMLLib.obj/ULInteractionNode.m.o obj/libXMLLib.obj/ULParameterTree.m.o obj/libXMLLib.obj/ULMolecularLibraryNode.m.o obj/libXMLLib.obj/ULMoleculeClassNode.m.o obj/libXMLLib.obj/ULMoleculeNode.m.o obj/libXMLLib.obj/ULConnectivityNode.m.o obj/libXMLLib.obj/ULAtomListNode.m.o obj/libXMLLib.obj/ULMolecularLibraryTree.m.o -L/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/AdunKernel.framework/Versions/Current -L/usr/local/lib -L/usr/lib -lAdunKernel -lgnustep-base -lobjc && (cd ./obj; rm -f libXMLLib.so; if [ "libXMLLib.so.0" != "libXMLLib.so.0.1" ]; then rm -f libXMLLib.so.0; ln -s libXMLLib.so.0.1 libXMLLib.so.0; fi; ln -s libXMLLib.so.0 libXMLLib.so; ) make[2]: Leaving directory `/tmp/buildd/adun.app-0.81/UL/XMLLib' Making all in ULFramework ... make[2]: Entering directory `/tmp/buildd/adun.app-0.81/UL/ULFramework' Making build-headers for framework ULFramework... /usr/share/GNUstep/Makefiles/mkinstalldirs ULFramework.framework/Versions/0/Headers /usr/bin/install -c -p -m 644 ULFrameworkFunctions.h ULFramework.framework/Versions/0/Headers/ULFrameworkFunctions.h /usr/bin/install -c -p -m 644 ULFrameworkDefinitions.h ULFramework.framework/Versions/0/Headers/ULFrameworkDefinitions.h /usr/bin/install -c -p -m 644 PDBConfigurationBuilder.h ULFramework.framework/Versions/0/Headers/PDBConfigurationBuilder.h /usr/bin/install -c -p -m 644 ULConfigurationBuilder.h ULFramework.framework/Versions/0/Headers/ULConfigurationBuilder.h /usr/bin/install -c -p -m 644 ULDatabaseIndex.h ULFramework.framework/Versions/0/Headers/ULDatabaseIndex.h /usr/bin/install -c -p -m 644 ULDatabaseSimulationIndex.h ULFramework.framework/Versions/0/Headers/ULDatabaseSimulationIndex.h /usr/bin/install -c -p -m 644 ULDatabaseInterface.h ULFramework.framework/Versions/0/Headers/ULDatabaseInterface.h /usr/bin/install -c -p -m 644 ULFileSystemDatabaseBackend.h ULFramework.framework/Versions/0/Headers/ULFileSystemDatabaseBackend.h /usr/bin/install -c -p -m 644 ULInteractionsBuilder.h ULFramework.framework/Versions/0/Headers/ULInteractionsBuilder.h /usr/bin/install -c -p -m 644 ULIOManager.h ULFramework.framework/Versions/0/Headers/ULIOManager.h /usr/bin/install -c -p -m 644 ULMerger.h ULFramework.framework/Versions/0/Headers/ULMerger.h /usr/bin/install -c -p -m 644 ULProcess.h ULFramework.framework/Versions/0/Headers/ULProcess.h /usr/bin/install -c -p -m 644 ULProcessManager.h ULFramework.framework/Versions/0/Headers/ULProcessManager.h /usr/bin/install -c -p -m 644 ULServerManager.h ULFramework.framework/Versions/0/Headers/ULServerManager.h /usr/bin/install -c -p -m 644 ULAnalysisManager.h ULFramework.framework/Versions/0/Headers/ULAnalysisManager.h /usr/bin/install -c -p -m 644 ULSimpleMergerDelegate.h ULFramework.framework/Versions/0/Headers/ULSimpleMergerDelegate.h /usr/bin/install -c -p -m 644 ULSystem.h ULFramework.framework/Versions/0/Headers/ULSystem.h /usr/bin/install -c -p -m 644 ULSystemBuilder.h ULFramework.framework/Versions/0/Headers/ULSystemBuilder.h /usr/bin/install -c -p -m 644 ULSystemController.h ULFramework.framework/Versions/0/Headers/ULSystemController.h /usr/bin/install -c -p -m 644 ULTopologyFrameBuilder.h ULFramework.framework/Versions/0/Headers/ULTopologyFrameBuilder.h /usr/bin/install -c -p -m 644 ULConfigurationPlugin.h ULFramework.framework/Versions/0/Headers/ULConfigurationPlugin.h /usr/bin/install -c -p -m 644 ULMergerDelegate.h ULFramework.framework/Versions/0/Headers/ULMergerDelegate.h /usr/bin/install -c -p -m 644 ULServerInterface.h ULFramework.framework/Versions/0/Headers/ULServerInterface.h /usr/bin/install -c -p -m 644 ULMenuExtensions.h ULFramework.framework/Versions/0/Headers/ULMenuExtensions.h /usr/bin/install -c -p -m 644 ULTemplate.h ULFramework.framework/Versions/0/Headers/ULTemplate.h /usr/bin/install -c -p -m 644 ULAnalysisPlugin.h ULFramework.framework/Versions/0/Headers/ULAnalysisPlugin.h /usr/bin/install -c -p -m 644 ULFramework.h ULFramework.framework/Versions/0/Headers/ULFramework.h /usr/share/GNUstep/Makefiles/mkinstalldirs ./derived_src; \ touch derived_src/.stamp /usr/share/GNUstep/Makefiles/mkinstalldirs ULFramework.framework/Versions/0/Resources cd ./ULFramework.framework/Versions; \ rm -f Current; \ ln -s 0 Current cd ./ULFramework.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "ULFramework" ]; then \ rm -f ./ULFramework; \ ln -s ../ULFramework.framework/Headers \ ./ULFramework; \ fi cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for framework ULFramework... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/ULFramework.obj/ gcc ULFrameworkFunctions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULFrameworkFunctions.m.o gcc PDBConfigurationBuilder.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/PDBConfigurationBuilder.m.o PDBConfigurationBuilder.m: In function '-[PDBConfigurationBuilder _processChain:section:selection:atomMatrix:]': PDBConfigurationBuilder.m:167:14: warning: variable 'residueName' set but not used [-Wunused-but-set-variable] PDBConfigurationBuilder.m: In function '-[PDBConfigurationBuilder initWithMoleculeAtPath:]': PDBConfigurationBuilder.m:435:12: warning: unused variable 'temp' [-Wunused-variable] PDBConfigurationBuilder.m:433:12: warning: variable 'pathExtension' set but not used [-Wunused-but-set-variable] PDBConfigurationBuilder.m: In function '-[PDBStructureModifier init]': PDBConfigurationBuilder.m:866:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m: In function '-[PDBStructureModifier modifyStructureForEnzymix:]': PDBConfigurationBuilder.m:931:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:934:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m: In function '-[PDBStructureModifier removeEnzymixStructureModifications:]': PDBConfigurationBuilder.m:960:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:963:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:957:10: warning: unused variable 'atom' [-Wunused-variable] PDBConfigurationBuilder.m: In function '-[PDBStructureModifier _renumberHeterogensAndSolvent:]': PDBConfigurationBuilder.m:987:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:1019:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:1021:5: warning: 'MTResidue' may not respond to '-setNumber:' [enabled by default] PDBConfigurationBuilder.m:1021:5: warning: (Messages without a matching method signature [enabled by default] PDBConfigurationBuilder.m:1021:5: warning: will be assumed to return 'id' and accept [enabled by default] PDBConfigurationBuilder.m:1021:5: warning: '...' as arguments.) [enabled by default] PDBConfigurationBuilder.m: In function '-[PDBStructureModifier _addCharmmTermini:]': PDBConfigurationBuilder.m:1056:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:1076:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:1106:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:1109:5: warning: 'MTResidue' may not respond to '-setNumber:' [enabled by default] PDBConfigurationBuilder.m:1119:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:1141:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:1157:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:1186:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m: In function '-[PDBStructureModifier modifyStructureForCharmm:]': PDBConfigurationBuilder.m:1222:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:1225:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m: In function '-[PDBStructureModifier removeCharmmStructureModifications:]': PDBConfigurationBuilder.m:1263:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:1266:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] PDBConfigurationBuilder.m:1260:10: warning: unused variable 'atom' [-Wunused-variable] PDBConfigurationBuilder.m: In function '-[PDBConfigurationBuilder _structureObjectForPDB:]': PDBConfigurationBuilder.m:64:2: warning: 'molStruct' may be used uninitialized in this function [-Wmaybe-uninitialized] PDBConfigurationBuilder.m: In function '-[PDBConfigurationBuilder _processChain:section:selection:atomMatrix:]': PDBConfigurationBuilder.m:224:8: warning: 'residueEnum' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc ULConfigurationBuilder.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULConfigurationBuilder.m.o ULConfigurationBuilder.m: In function '+[ULConfigurationBuilder builderForMoleculeAtPath:]': ULConfigurationBuilder.m:32:12: warning: variable 'pathExtension' set but not used [-Wunused-but-set-variable] gcc ULDatabaseIndex.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULDatabaseIndex.m.o ULDatabaseIndex.m: In function '-[ULDatabaseIndex removeObjectsWithIds:error:]': ULDatabaseIndex.m:378:2: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized] ULDatabaseIndex.m: In function '-[ULDatabaseIndex removeOutputReferenceToObjectWithId:fromObjectWithId:]': ULDatabaseIndex.m:396:4: warning: 'ident' may be used uninitialized in this function [-Wuninitialized] ULDatabaseIndex.m: In function '-[ULDatabaseIndex initWithCoder:]': ULDatabaseIndex.m:589:2: warning: 'date' may be used uninitialized in this function [-Wmaybe-uninitialized] ULDatabaseIndex.m:589:2: warning: 'lastSaveDate' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc ULDatabaseSimulationIndex.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULDatabaseSimulationIndex.m.o gcc ULDatabaseInterface.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULDatabaseInterface.m.o gcc ULFileSystemDatabaseBackend.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULFileSystemDatabaseBackend.m.o ULFileSystemDatabaseBackend.m: In function '-[ULFileSystemDatabaseBackend _saveIndex:ofClass:]': ULFileSystemDatabaseBackend.m:113:2: warning: 'file' may be used uninitialized in this function [-Wmaybe-uninitialized] ULFileSystemDatabaseBackend.m: In function '-[ULFileSystemDatabaseBackend updateMetadataForObject:inSchema:error:]': ULFileSystemDatabaseBackend.m:845:7: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized] ULFileSystemDatabaseBackend.m: In function '-[ULFileSystemDatabaseBackend removeObjectOfClass:withID:fromSchema:error:]': ULFileSystemDatabaseBackend.m:995:7: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized] ULFileSystemDatabaseBackend.m: In function '-[ULFileSystemDatabaseBackend removeObjectsOfClass:withIDs:fromSchema:error:]': ULFileSystemDatabaseBackend.m:1077:5: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc ULInteractionsBuilder.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULInteractionsBuilder.m.o gcc ULIOManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULIOManager.m.o ULIOManager.m: In function '-[ULIOManager _importQuickStartFiles]': ULIOManager.m:64:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULIOManager.m: In function '-[NSFileManager(ULExtensions) createDirectoryAtPath:attributes:error:]': ULIOManager.m:389:12: warning: variable 'containingDir' set but not used [-Wunused-but-set-variable] gcc ULMerger.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULMerger.m.o ULMerger.m: In function '-[ULMerger mergeTopologyFrame:withConfiguration:error:userInfo:]': ULMerger.m:159:49: warning: variable 'indexes' set but not used [-Wunused-but-set-variable] gcc ULProcess.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULProcess.m.o ULProcess.m: In function '-[ULProcess setSimulationData:]': ULProcess.m:225:12: warning: variable 'ident' set but not used [-Wunused-but-set-variable] ULProcess.m: In function '-[ULProcess setControllerResults:]': ULProcess.m:215:4: warning: 'dataSet' is used uninitialized in this function [-Wuninitialized] gcc ULProcessManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULProcessManager.m.o ULProcessManager.m: In function '-[ULProcessManager optionsForCommand:process:]': ULProcessManager.m:811:4: warning: 'proxy' may be used uninitialized in this function [-Wmaybe-uninitialized] ULProcessManager.m: In function '-[ULProcessManager validCommandsForProcess:]': ULProcessManager.m:825:2: warning: 'proxy' may be used uninitialized in this function [-Wmaybe-uninitialized] ULProcessManager.m: In function '-[ULProcessManager execute:error:process:]': ULProcessManager.m:797:2: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized] ULProcessManager.m:793:6: warning: 'proxy' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc ULServerManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULServerManager.m.o ULServerManager.m: In function '-[ULServerManager(ConnectionMethods) _handleConnectionDidDie:]': ULServerManager.m:84:23: warning: unused variable 'errorInfo' [-Wunused-variable] ULServerManager.m: In function '-[ULServerManager(ConnectionMethods) _removeConnectionToHost:]': ULServerManager.m:292:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULServerManager.m:265:5: warning: variable 'server' set but not used [-Wunused-but-set-variable] ULServerManager.m: In function '-[ULServerManager init]': ULServerManager.m:338:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULServerManager.m:351:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULServerManager.m: In function '-[ULServerManager dealloc]': ULServerManager.m:378:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULServerManager.m: In function '-[ULServerManager checkPortTimeoutException:]': ULServerManager.m:506:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc ULAnalysisManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULAnalysisManager.m.o ULAnalysisManager.m: In function '-[ULAnalysisManager _addPluginsInDirectory:]': ULAnalysisManager.m:83:66: warning: unused variable 'resourceFilename' [-Wunused-variable] ULAnalysisManager.m:83:48: warning: unused variable 'pluginOutputDir' [-Wunused-variable] ULAnalysisManager.m:83:35: warning: unused variable 'pluginName' [-Wunused-variable] ULAnalysisManager.m:82:32: warning: unused variable 'pluginEnum' [-Wunused-variable] ULAnalysisManager.m:142:1: warning: no return statement in function returning non-void [-Wreturn-type] ULAnalysisManager.m: In function '-[ULAnalysisManager locationOfPlugin:]': ULAnalysisManager.m:581:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc ULSimpleMergerDelegate.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULSimpleMergerDelegate.m.o ULSimpleMergerDelegate.m: In function '-[ULSimpleMergerDelegate _updateConfiguration]': ULSimpleMergerDelegate.m:109:4: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] ULSimpleMergerDelegate.m:109:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSimpleMergerDelegate.m:111:4: warning: passing argument 1 of 'removeObjectsFromIndices:numIndices:' from incompatible pointer type [enabled by default] ULSimpleMergerDelegate.m:111:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSimpleMergerDelegate.m:113:4: warning: passing argument 1 of 'removeObjectsFromIndices:numIndices:' from incompatible pointer type [enabled by default] ULSimpleMergerDelegate.m:113:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSimpleMergerDelegate.m: In function '-[ULSimpleMergerDelegate finalise]': ULSimpleMergerDelegate.m:215:4: warning: passing argument 1 of 'getIndexes:maxCount:inIndexRange:' from incompatible pointer type [enabled by default] ULSimpleMergerDelegate.m:215:4: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSimpleMergerDelegate.m:216:2: warning: passing argument 1 of 'removeObjectsFromIndices:numIndices:' from incompatible pointer type [enabled by default] ULSimpleMergerDelegate.m:216:2: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' gcc ULSystem.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULSystem.m.o ULSystem.m: In function '-[ULSystem _decodeArrayOfDoublesForKey:usingCoder:]': ULSystem.m:183:2: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] ULSystem.m:183:2: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSystem.m: In function '-[ULSystem _decodeBondedAtomsWithCoder:]': ULSystem.m:213:7: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] ULSystem.m:213:7: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSystem.m:216:6: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] ULSystem.m:216:6: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSystem.m: In function '-[ULSystem _decodeIndexArrayForKey:usingCoder:]': ULSystem.m:251:2: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] ULSystem.m:251:2: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' ULSystem.m:255:5: warning: passing argument 2 of 'decodeBytesForKey:returnedLength:' from incompatible pointer type [enabled by default] ULSystem.m:255:5: note: expected 'NSUInteger *' but argument is of type 'unsigned int *' gcc ULSystemBuilder.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULSystemBuilder.m.o ULSystemBuilder.m: In function '+[ULSystemBuilder initialize]': ULSystemBuilder.m:32:5: warning: unused variable 'debugLevels' [-Wunused-variable] gcc ULSystemController.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULSystemController.m.o gcc ULMenuExtensions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULMenuExtensions.m.o gcc ULTemplate.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULTemplate.m.o ULTemplate.m: In function '-[ULTemplate validateTemplate:]': ULTemplate.m:593:11: warning: variable 'names' set but not used [-Wunused-but-set-variable] ULTemplate.m: In function '-[ULTemplate(PrivateObjectAdditions) _addObjectTemplate:withName:toSection:]': ULTemplate.m:168:5: warning: 'className' may be used uninitialized in this function [-Wuninitialized] gcc ULTopologyFrameBuilder.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULTopologyFrameBuilder.m.o gcc ULURLDownload.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/ULFramework.obj/ULURLDownload.m.o classes=""; \ for object_file in ./obj/ULFramework.obj/ULFrameworkFunctions.m.o ./obj/ULFramework.obj/PDBConfigurationBuilder.m.o ./obj/ULFramework.obj/ULConfigurationBuilder.m.o ./obj/ULFramework.obj/ULDatabaseIndex.m.o ./obj/ULFramework.obj/ULDatabaseSimulationIndex.m.o ./obj/ULFramework.obj/ULDatabaseInterface.m.o ./obj/ULFramework.obj/ULFileSystemDatabaseBackend.m.o ./obj/ULFramework.obj/ULInteractionsBuilder.m.o ./obj/ULFramework.obj/ULIOManager.m.o ./obj/ULFramework.obj/ULMerger.m.o ./obj/ULFramework.obj/ULProcess.m.o ./obj/ULFramework.obj/ULProcessManager.m.o ./obj/ULFramework.obj/ULServerManager.m.o ./obj/ULFramework.obj/ULAnalysisManager.m.o ./obj/ULFramework.obj/ULSimpleMergerDelegate.m.o ./obj/ULFramework.obj/ULSystem.m.o ./obj/ULFramework.obj/ULSystemBuilder.m.o ./obj/ULFramework.obj/ULSystemController.m.o ./obj/ULFramework.obj/ULMenuExtensions.m.o ./obj/ULFramework.obj/ULTemplate.m.o ./obj/ULFramework.obj/ULTopologyFrameBuilder.m.o ./obj/ULFramework.obj/ULURLDownload.m.o __dummy__; do \ if [ "$object_file" != "__dummy__" ]; then \ sym=`nm -Pg $object_file | sed -n -e '/^__objc_class_name_[A-Za-z0-9_.]* [^U]/ {s/^__objc_class_name_\([A-Za-z0-9_.]*\) [^U].*/\1/p;}'`; \ classes="$classes $sym"; \ fi; \ done; \ classlist=""; \ classarray=""; \ for f in $classes __dummy__ ; do \ if [ "$f" != "__dummy__" ]; then \ if [ "$classlist" = "" ]; then \ classlist="@\"$f\""; \ classarray="(\"$f\""; \ else \ classlist="$classlist, @\"$f\""; \ classarray="$classarray, \"$f\""; \ fi; \ fi; \ done; \ if [ "$classlist" = "" ]; then \ classlist="NULL"; \ classarray="()"; \ else \ classlist="$classlist, NULL"; \ classarray="$classarray)"; \ fi; \ echo "$classarray" > ./derived_src/ULFramework-class-list; \ echo "#include " > derived_src/NSFramework_ULFramework.m; \ echo "@interface NSFramework_ULFramework" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *)frameworkEnv;" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *)frameworkPath;" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *)frameworkVersion;" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *const*)frameworkClasses;" >> derived_src/NSFramework_ULFramework.m; \ echo "@end" >> derived_src/NSFramework_ULFramework.m; \ echo "@implementation NSFramework_ULFramework" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *)frameworkEnv { return nil; }" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *)frameworkPath { return @\"/tmp/buildd/GNUstep/Library/Frameworks\"; }" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *)frameworkVersion { return @\"0\"; }" >> derived_src/NSFramework_ULFramework.m; \ echo "static NSString *allClasses[] = {$classlist};" >> derived_src/NSFramework_ULFramework.m; \ echo "+ (NSString *const*)frameworkClasses { return allClasses; }" >> derived_src/NSFramework_ULFramework.m;\ echo "@end" >> derived_src/NSFramework_ULFramework.m gcc derived_src/NSFramework_ULFramework.m -c -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/UL/XMLLib -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I../ -I./derived_src -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep -o obj/ULFramework.obj/NSFramework_ULFramework.o \ gcc -shared -Wl,-soname,libULFramework.so.0 -rdynamic -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -o ./ULFramework.framework/Versions/0/./libULFramework.so.0.6 obj/ULFramework.obj/NSFramework_ULFramework.o obj/ULFramework.obj/ULFrameworkFunctions.m.o obj/ULFramework.obj/PDBConfigurationBuilder.m.o obj/ULFramework.obj/ULConfigurationBuilder.m.o obj/ULFramework.obj/ULDatabaseIndex.m.o obj/ULFramework.obj/ULDatabaseSimulationIndex.m.o obj/ULFramework.obj/ULDatabaseInterface.m.o obj/ULFramework.obj/ULFileSystemDatabaseBackend.m.o obj/ULFramework.obj/ULInteractionsBuilder.m.o obj/ULFramework.obj/ULIOManager.m.o obj/ULFramework.obj/ULMerger.m.o obj/ULFramework.obj/ULProcess.m.o obj/ULFramework.obj/ULProcessManager.m.o obj/ULFramework.obj/ULServerManager.m.o obj/ULFramework.obj/ULAnalysisManager.m.o obj/ULFramework.obj/ULSimpleMergerDelegate.m.o obj/ULFramework.obj/ULSystem.m.o obj/ULFramework.obj/ULSystemBuilder.m.o obj/ULFramework.obj/ULSystemController.m.o obj/ULFramework.obj/ULMenuExtensions.m.o obj/ULFramework.obj/ULTemplate.m.o obj/ULFramework.obj/ULTopologyFrameBuilder.m.o obj/ULFramework.obj/ULURLDownload.m.o -L../XMLLib/obj -L/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/AdunKernel.framework/Versions/Current -L/tmp/buildd/adun.app-0.81/MolTalk/MolTalk.framework/Versions/Current -L/usr/local/lib -L/usr/lib -lAdunKernel -lMolTalk -lXMLLib -lgsl -lgslcblas -lm -lgnustep-base -lobjc && (cd ./ULFramework.framework/Versions/0/.; rm -f libULFramework.so; if [ "libULFramework.so.0" != "libULFramework.so.0.6" ]; then rm -f libULFramework.so.0; ln -s libULFramework.so.0.6 libULFramework.so.0; fi; ln -s libULFramework.so.0 libULFramework.so; ) || rm -f ./ULFramework.framework/Versions/0/./libULFramework.so.0.6 ; \ (cd ./ULFramework.framework/Versions/0/.; \ rm -f ULFramework; \ ln -s libULFramework.so ULFramework) \ for f in Resources/ScriptingInfo.plist Resources/objectTemplates.plist Resources/pdbBuilderOptions.plist Resources/pdbNameMap.plist Resources/iupacPdbMap.plist Resources/Version Resources/ForceFields; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./ULFramework.framework/Versions/0/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done (echo "{"; echo ' NOTE = "Automatically generated, do not edit!";'; \ echo " NSExecutable = \"ULFramework\";"; \ echo " NSMainNibFile = \"\";"; \ echo " NSPrincipalClass = \"ULFramework\";"; \ echo " Classes = "; \ cat ./derived_src/ULFramework-class-list; \ echo " ;"; \ echo "}") >ULFramework.framework/Versions/0/Resources/Info-gnustep.plist if [ -r "ULFrameworkInfo.plist" ]; then \ plmerge ULFramework.framework/Versions/0/Resources/Info-gnustep.plist ULFrameworkInfo.plist; \ fi cd ./ULFramework.framework/.; \ rm -f ULFramework libULFramework.so; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./ULFramework short` \ ULFramework; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh . \ Versions/Current/./libULFramework.so short` \ libULFramework.so make[2]: Leaving directory `/tmp/buildd/adun.app-0.81/UL/ULFramework' Making all in AdunServer ... make[2]: Entering directory `/tmp/buildd/adun.app-0.81/UL/AdunServer' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for tool AdunServer... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/AdunServer.obj/ gcc AdServer.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I/tmp/buildd/adun.app-0.81/Kernel -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/AdunServer.obj/AdServer.m.o AdServer.m: In function '-[AdServer(RemoteSimulationManagement) startSimulation:]': AdServer.m:323:18: warning: unused variable 'arguments' [-Wunused-variable] AdServer.m:321:11: warning: unused variable 'error' [-Wunused-variable] AdServer.m: In function '-[AdServer(RemoteSimulationManagement) reconnectProcess:]': AdServer.m:424:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc main.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I/tmp/buildd/adun.app-0.81/Kernel -I../ -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/AdunServer.obj/main.m.o main.m: In function 'main': main.m:32:5: warning: variable 'server' set but not used [-Wunused-but-set-variable] gcc -rdynamic -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -fgnu-runtime -o obj/AdunServer \ ./obj/AdunServer.obj/AdServer.m.o ./obj/AdunServer.obj/main.m.o \ -L/tmp/buildd/adun.app-0.81/MolTalk/MolTalk.framework/Versions/Current -L/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/AdunKernel.framework/Versions/Current/ -L/tmp/buildd/adun.app-0.81/Kernel/Base/obj -L../ULFramework/ULFramework.framework/Versions/Current -L../XMLLib/obj -L/usr/local/lib -L/usr/lib -lXMLLib -lULFramework -ladun_base -lAdunKernel -lMolTalk -lgnustep-base -lpthread -lobjc -lm make[2]: Leaving directory `/tmp/buildd/adun.app-0.81/UL/AdunServer' cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj Making all for app UL... cd .; \ /usr/share/GNUstep/Makefiles/mkinstalldirs ./obj/UL.obj/ /usr/share/GNUstep/Makefiles/mkinstalldirs UL.app/. gcc ViewController.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ViewController.m.o ViewController.m: In function '-[ViewController init]': ViewController.m:162:5: warning: unused variable 'icon' [-Wunused-variable] ViewController.m: In function '-[ViewController awakeFromNib]': ViewController.m:252:20: warning: variable 'ioManager' set but not used [-Wunused-but-set-variable] ViewController.m:252:11: warning: unused variable 'columns' [-Wunused-variable] ViewController.m:252:5: warning: unused variable 'item' [-Wunused-variable] ViewController.m:250:10: warning: unused variable 'mainMenu' [-Wunused-variable] ViewController.m: In function '-[ViewController applicationDidFinishLaunching:]': ViewController.m:345:23: warning: unused variable 'userInfo' [-Wunused-variable] ViewController.m: In function '-[ViewController application:openFile:]': ViewController.m:400:1: warning: no return statement in function returning non-void [-Wreturn-type] ViewController.m: In function '-[ViewController handleProcessReconnectionError:]': ViewController.m:503:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ViewController.m: In function '-[ViewController validateSimulationCommand:]': ViewController.m:636:5: warning: unused variable 'selectedItem' [-Wunused-variable] ViewController.m: In function '-[ViewController validateMenuItem:]': ViewController.m:672:5: warning: unused variable 'object' [-Wunused-variable] ViewController.m: In function '-[ViewController _displayFileLinux:]': ViewController.m:754:10: warning: variable 'task' set but not used [-Wunused-but-set-variable] ViewController.m: In function '-[ViewController _displayFileOSX:]': ViewController.m:778:10: warning: variable 'task' set but not used [-Wunused-but-set-variable] ViewController.m: In function '-[ViewController _viewLog:]': ViewController.m:804:12: warning: unused variable 'string' [-Wunused-variable] gcc ULSimulationCreator.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULSimulationCreator.m.o ULSimulationCreator.m: In function '-[ULSimulationCreator _checkInputData]': ULSimulationCreator.m:36:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULSimulationCreator.m: In function '-[ULSimulationCreator _checkTemplateReferences]': ULSimulationCreator.m:99:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULSimulationCreator.m: In function '-[ULSimulationCreator init]': ULSimulationCreator.m:123:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULSimulationCreator.m: In function '-[ULSimulationCreator tableView:objectValueForTableColumn:row:]': ULSimulationCreator.m:379:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULSimulationCreator.m:362:19: warning: unused variable 'string' [-Wunused-variable] ULSimulationCreator.m:396:1: warning: control reaches end of non-void function [-Wreturn-type] gcc ULPasteboard.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULPasteboard.m.o ULPasteboard.m: In function '-[ULPasteboard init]': ULPasteboard.m:20:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULPasteboard.m: In function '-[ULPasteboard availableTypeFromArray:]': ULPasteboard.m:54:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULPasteboard.m: In function '-[ULPasteboard setPasteboardOwner:]': ULPasteboard.m:83:2: warning: passing argument 1 of 'pasteboardChangedOwner:' from distinct Objective-C type [enabled by default] gcc ULStatusTable.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULStatusTable.m.o ULStatusTable.m: In function '-[ULStatusTable init]': ULStatusTable.m:53:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULStatusTable.m: In function '-[ULStatusTable awakeFromNib]': ULStatusTable.m:65:12: warning: unused variable 'welcomeString' [-Wunused-variable] ULStatusTable.m: In function '-[ULStatusTable _tryExportProcess:toFile:overwrite:]': ULStatusTable.m:128:2: warning: no '-exportProcess:toFile:overwrite:error:' method found [enabled by default] ULStatusTable.m:128:2: warning: (Messages without a matching method signature [enabled by default] ULStatusTable.m:128:2: warning: will be assumed to return 'id' and accept [enabled by default] ULStatusTable.m:128:2: warning: '...' as arguments.) [enabled by default] ULStatusTable.m: In function '-[ULStatusTable tableView:objectValueForTableColumn:row:]': ULStatusTable.m:344:5: warning: unused variable 'key' [-Wunused-variable] gcc ULViewControllerSimulationCommands.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULViewControllerSimulationCommands.m.o ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) halt:]': ULViewControllerSimulationCommands.m:7:6: warning: unused variable 'row' [-Wunused-variable] ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) restart:]': ULViewControllerSimulationCommands.m:26:6: warning: unused variable 'row' [-Wunused-variable] ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) terminateProcess:]': ULViewControllerSimulationCommands.m:44:6: warning: unused variable 'row' [-Wunused-variable] ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) start:]': ULViewControllerSimulationCommands.m:62:6: warning: unused variable 'row' [-Wunused-variable] ULViewControllerSimulationCommands.m: In function '-[ViewController(SimulationCommands) execute:]': ULViewControllerSimulationCommands.m:91:6: warning: unused variable 'row' [-Wunused-variable] gcc ULPropertiesPanel.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULPropertiesPanel.m.o ULPropertiesPanel.m: In function '-[ULPropertiesPanel awakeFromNib]': ULPropertiesPanel.m:98:5: warning: unused variable 'item' [-Wunused-variable] ULPropertiesPanel.m: In function '-[ULPropertiesPanel _displayAnnotations:]': ULPropertiesPanel.m:289:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc ULOutlineViewDelegate.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULOutlineViewDelegate.m.o ULOutlineViewDelegate.m: In function '+[ULOutlineViewWrapper wrapperForObject:parent:identifier:]': ULOutlineViewDelegate.m:68:4: warning: @interface of class 'ULSelectionWrapper' not found [enabled by default] ULOutlineViewDelegate.m:75:5: warning: @interface of class 'ULNodeWrapper' not found [enabled by default] ULOutlineViewDelegate.m:82:3: warning: @interface of class 'ULOptionsLeaf' not found [enabled by default] ULOutlineViewDelegate.m: In function '-[ULNodeWrapper _setChildren]': ULOutlineViewDelegate.m:172:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULOutlineViewDelegate.m: In function '-[ULNodeWrapper childForIdentifier:]': ULOutlineViewDelegate.m:214:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildrenForArray]': ULOutlineViewDelegate.m:260:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULOutlineViewDelegate.m:271:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULOutlineViewDelegate.m:285:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildrenForDictionary]': ULOutlineViewDelegate.m:319:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULOutlineViewDelegate.m:341:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildren]': ULOutlineViewDelegate.m:375:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULOutlineViewDelegate.m:399:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper initWithObject:parent:identifier:]': ULOutlineViewDelegate.m:407:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate initWithProperties:allowEditing:]': ULOutlineViewDelegate.m:530:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate initWithOptions:outlineColumnIdentifier:]': ULOutlineViewDelegate.m:554:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate outlineView:child:ofItem:]': ULOutlineViewDelegate.m:595:2: warning: multiple methods named '-childAtIndex:' found [enabled by default] In file included from /usr/include/GNUstep/Foundation/NSXMLDocument.h:29:0, from /usr/include/GNUstep/Foundation/Foundation.h:132, from ULOutlineViewDelegate.h:24, from ULOutlineViewDelegate.m:23: /usr/include/GNUstep/Foundation/NSXMLNode.h:202:1: note: using '-(NSXMLNode *)childAtIndex:(NSUInteger)index' /usr/include/GNUstep/Foundation/NSXMLNode.h:202:1: note: also found '-(NSXMLNode *)childAtIndex:(NSUInteger)index' ULOutlineViewDelegate.m:50:1: note: also found '-(id)childAtIndex:(int)index' ULOutlineViewDelegate.m:595:2: warning: multiple methods named '-childAtIndex:' found [enabled by default] In file included from /usr/include/GNUstep/Foundation/NSXMLDocument.h:29:0, from /usr/include/GNUstep/Foundation/Foundation.h:132, from ULOutlineViewDelegate.h:24, from ULOutlineViewDelegate.m:23: /usr/include/GNUstep/Foundation/NSXMLNode.h:202:1: note: using '-(NSXMLNode *)childAtIndex:(NSUInteger)index' /usr/include/GNUstep/Foundation/NSXMLNode.h:202:1: note: also found '-(NSXMLNode *)childAtIndex:(NSUInteger)index' ULOutlineViewDelegate.m:50:1: note: also found '-(id)childAtIndex:(int)index' ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate outlineView:setObjectValue:forTableColumn:byItem:]': ULOutlineViewDelegate.m:634:3: warning: 'NSXMLNode' may not respond to '-setValue:forChild:' [enabled by default] ULOutlineViewDelegate.m:634:3: warning: (Messages without a matching method signature [enabled by default] ULOutlineViewDelegate.m:634:3: warning: will be assumed to return 'id' and accept [enabled by default] ULOutlineViewDelegate.m:634:3: warning: '...' as arguments.) [enabled by default] ULOutlineViewDelegate.m: In function '-[ULOutlineViewDelegate outlineViewSelectionDidChange:]': ULOutlineViewDelegate.m:645:19: warning: unused variable 'i' [-Wunused-variable] ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildrenForArray]': ULOutlineViewDelegate.m:263:4: warning: 'choiceArray' may be used uninitialized in this function [-Wmaybe-uninitialized] ULOutlineViewDelegate.m: In function '-[ULSelectionWrapper _setChildren]': ULOutlineViewDelegate.m:390:2: warning: 'optionsType' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc ULSystemViewController.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULSystemViewController.m.o ULSystemViewController.m: In function '-[ULSystemViewController init]': ULSystemViewController.m:40:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULSystemViewController.m: In function '-[ULSystemViewController _insertString:fontType:]': ULSystemViewController.m:102:29: warning: unused variable 'boldString' [-Wunused-variable] ULSystemViewController.m: In function '-[ULSystemViewController handleNotification:]': ULSystemViewController.m:122:10: warning: unused variable 'range' [-Wunused-variable] ULSystemViewController.m: In function '-[ULSystemViewController _setDelegateForOptions:]': ULSystemViewController.m:187:5: warning: passing argument 1 of 'initWithOptions:' makes integer from pointer without a cast [enabled by default] ULSystemViewController.m:187:5: note: expected 'NSPointerFunctionsOptions' but argument is of type 'id' ULSystemViewController.m: In function '-[ULSystemViewController open:]': ULSystemViewController.m:251:10: warning: unused variable 'range' [-Wunused-variable] ULSystemViewController.m: In function '-[ULSystemViewController createSystem:]': ULSystemViewController.m:565:6: warning: unused variable 'choice' [-Wunused-variable] ULSystemViewController.m:562:12: warning: unused variable 'output' [-Wunused-variable] ULSystemViewController.m:561:12: warning: unused variable 'filePath' [-Wunused-variable] ULSystemViewController.m:559:7: warning: unused variable 'cancel' [-Wunused-variable] ULSystemViewController.m: In function '-[ULSystemViewController(PDBDownloadAdditions) downloadFinished]': ULSystemViewController.m:884:10: warning: unused variable 'data' [-Wunused-variable] gcc ULDatabaseBrowser.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULDatabaseBrowser.m.o ULDatabaseBrowser.m: In function '-[ULDatabaseBrowserPath init]': ULDatabaseBrowser.m:30:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser init]': ULDatabaseBrowser.m:133:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser awakeFromNib]': ULDatabaseBrowser.m:241:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULDatabaseBrowser.m:167:25: warning: unused variable 'client' [-Wunused-variable] ULDatabaseBrowser.m:167:17: warning: unused variable 'schema' [-Wunused-variable] ULDatabaseBrowser.m:166:17: warning: unused variable 'column' [-Wunused-variable] ULDatabaseBrowser.m:165:16: warning: unused variable 'userInfo' [-Wunused-variable] ULDatabaseBrowser.m:164:16: warning: unused variable 'columnEnum' [-Wunused-variable] ULDatabaseBrowser.m:163:41: warning: unused variable 'schemaEnum' [-Wunused-variable] ULDatabaseBrowser.m:163:28: warning: unused variable 'clientEnum' [-Wunused-variable] ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser _remove:]': ULDatabaseBrowser.m:393:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULDatabaseBrowser.m:435:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULDatabaseBrowser.m:546:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser import:]': ULDatabaseBrowser.m:864:7: warning: unused variable 'retVal' [-Wunused-variable] ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser objectsForType:]': ULDatabaseBrowser.m:1043:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULDatabaseBrowser.m:1059:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULDatabaseBrowser.m: In function '-[ULDatabaseBrowser _remove:]': ULDatabaseBrowser.m:556:4: warning: 'lastRow' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc ULDatabaseBrowserDataDisplay.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULDatabaseBrowserDataDisplay.m.o ULDatabaseBrowserDataDisplay.m: In function '-[ULDatabaseBrowser(ULDatabaseBrowserDataDisplay) outlineView:child:ofItem:]': ULDatabaseBrowserDataDisplay.m:73:2: warning: 'object' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc ULAnalyser.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULAnalyser.m.o ULAnalyser.m: In function '-[ULAnalyser awakeFromNib]': ULAnalyser.m:119:11: warning: unused variable 'plugins' [-Wunused-variable] ULAnalyser.m:118:15: warning: variable 'ioManager' set but not used [-Wunused-but-set-variable] ULAnalyser.m: In function '-[ULAnalyser open:]': ULAnalyser.m:213:10: warning: unused variable 'endRange' [-Wunused-variable] ULAnalyser.m: In function '-[ULAnalyser _threadedLoadSimulation:]': ULAnalyser.m:418:5: warning: unused variable 'holder' [-Wunused-variable] ULAnalyser.m: In function '-[ULAnalyser _flushProcessEnergies:]': ULAnalyser.m:496:5: warning: variable 'result' set but not used [-Wunused-but-set-variable] ULAnalyser.m: In function '-[ULAnalyser _loadObject:ofType:]': ULAnalyser.m:590:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyser.m: In function '-[ULAnalyser load:]': ULAnalyser.m:605:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyser.m:611:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyser.m: In function '-[ULAnalyser remove:]': ULAnalyser.m:625:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyser.m: In function '-[ULAnalyser save:]': ULAnalyser.m:681:30: warning: unused variable 'inputObjectsEnum' [-Wunused-variable] ULAnalyser.m:681:16: warning: unused variable 'resultsEnum' [-Wunused-variable] ULAnalyser.m:680:17: warning: unused variable 'inputObject' [-Wunused-variable] ULAnalyser.m:679:5: warning: unused variable 'dataSet' [-Wunused-variable] ULAnalyser.m: In function '-[ULAnalyser(ULAnalyserDataSetOpening) openDataSets:]': ULAnalyser.m:1055:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyser.m: In function '-[ULAnalyser(ULAnalyserDataSetOpening) openDataSet:]': ULAnalyser.m:1073:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyser.m: In function '-[ULAnalyser(ULAnalyserDataSetOpening) setAvailableDataSets:]': ULAnalyser.m:1138:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyser.m: In function '-[ULAnalyser(ULAnalyserDataSetOpening) dataSetDidChange:]': ULAnalyser.m:1183:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc ULAnalyserPluginExtensions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULAnalyserPluginExtensions.m.o ULAnalyserPluginExtensions.m: In function '-[ULAnalyser(ULAnalyserPluginExtensions) _displayPluginFiles:]': ULAnalyserPluginExtensions.m:47:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyserPluginExtensions.m: In function '-[ULAnalyser(ULAnalyserPluginExtensions) displayOptionsForPlugin]': ULAnalyserPluginExtensions.m:124:6: warning: passing argument 1 of 'initWithOptions:' makes integer from pointer without a cast [enabled by default] ULAnalyserPluginExtensions.m:124:6: note: expected 'NSPointerFunctionsOptions' but argument is of type 'id' ULAnalyserPluginExtensions.m:135:6: warning: passing argument 1 of 'initWithOptions:' makes integer from pointer without a cast [enabled by default] ULAnalyserPluginExtensions.m:135:6: note: expected 'NSPointerFunctionsOptions' but argument is of type 'id' ULAnalyserPluginExtensions.m: In function '-[ULAnalyser(ULAnalyserPluginExtensions) applyCurrentPlugin:]': ULAnalyserPluginExtensions.m:261:2: warning: statement with no effect [-Wunused-value] gcc ULAnalyserGnuplotExtensions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULAnalyserGnuplotExtensions.m.o ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) setupGnuplotInterface]': ULAnalyserGnuplotExtensions.m:145:15: warning: unused variable 'ioManager' [-Wunused-variable] ULAnalyserGnuplotExtensions.m:144:17: warning: unused variable 'fileManager' [-Wunused-variable] ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) writeMatrixString:]': ULAnalyserGnuplotExtensions.m:290:16: warning: unused variable 'fileHandle' [-Wunused-variable] ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) _outputFileForMatrix:inDataSet:columnOrder:]': ULAnalyserGnuplotExtensions.m:333:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) createGnuplotFilesForDataSet:]': ULAnalyserGnuplotExtensions.m:370:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) removeGnuplotFilesForDataSet:]': ULAnalyserGnuplotExtensions.m:407:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) removeGnuplotFilesForDataSets:]': ULAnalyserGnuplotExtensions.m:418:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) textView:doCommandBySelector:]': ULAnalyserGnuplotExtensions.m:440:21: warning: unused variable 'errorString' [-Wunused-variable] ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) _previousStringFromHistory]': ULAnalyserGnuplotExtensions.m:258:2: warning: 'string' may be used uninitialized in this function [-Wmaybe-uninitialized] ULAnalyserGnuplotExtensions.m: In function '-[ULAnalyser(ULAnalyserGnuplotExtensions) _nextStringFromHistory]': ULAnalyserGnuplotExtensions.m:280:2: warning: 'string' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc ULAnalyserDataSetView.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULAnalyserDataSetView.m.o ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView init]': ULAnalyserDataSetView.m:9:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyserDataSetView.m:7:11: warning: unused variable 'error' [-Wunused-variable] ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView awakeFromNib]': ULAnalyserDataSetView.m:58:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView orderedColumnHeaders]': ULAnalyserDataSetView.m:89:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView _displayCurrentDataSetTable]': ULAnalyserDataSetView.m:100:10: warning: unused variable 'range' [-Wunused-variable] ULAnalyserDataSetView.m:99:5: warning: unused variable 'subsystem' [-Wunused-variable] ULAnalyserDataSetView.m:98:55: warning: unused variable 'diff' [-Wunused-variable] ULAnalyserDataSetView.m: In function '-[ULAnalyserDataSetView displayData]': ULAnalyserDataSetView.m:181:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc ULProgressPanel.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULProgressPanel.m.o ULProgressPanel.m: In function '-[ULProgressPanel initWithTitle:message:progressInfo:]': ULProgressPanel.m:48:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULProgressPanel.m: In function '-[ULProgressPanel runProgressPanel:]': ULProgressPanel.m:128:11: warning: unused variable 'updateEvent' [-Wunused-variable] ULProgressPanel.m: In function '-[ULProgressPanel _incrementFromNotification:]': ULProgressPanel.m:216:14: warning: 'currentStep' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc ULExportPanel.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULExportPanel.m.o ULExportPanel.m: In function '-[ULExportPanel init]': ULExportPanel.m:43:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc ULTemplateViewController.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULTemplateViewController.m.o ULTemplateViewController.m: In function '-[ULTemplateViewController _clearSectionMenus]': ULTemplateViewController.m:38:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULTemplateViewController.m: In function '-[ULTemplateViewController _addComponentWithName:toSectionMenu:]': ULTemplateViewController.m:56:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULTemplateViewController.m: In function '-[ULTemplateViewController _updateTemplateView]': ULTemplateViewController.m:63:12: warning: variable 'holder' set but not used [-Wunused-but-set-variable] ULTemplateViewController.m: In function '-[ULTemplateViewController _updateTemplateWithMenuValues]': ULTemplateViewController.m:90:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULTemplateViewController.m:93:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULTemplateViewController.m: In function '-[ULTemplateViewController init]': ULTemplateViewController.m:123:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULTemplateViewController.m: In function '-[ULTemplateViewController _outlineViewSelectionDidChange:]': ULTemplateViewController.m:227:6: warning: 'NSXMLNode' may not respond to '-identifier' [enabled by default] ULTemplateViewController.m:227:6: warning: (Messages without a matching method signature [enabled by default] ULTemplateViewController.m:227:6: warning: will be assumed to return 'id' and accept [enabled by default] ULTemplateViewController.m:227:6: warning: '...' as arguments.) [enabled by default] ULTemplateViewController.m: In function '-[ULTemplateViewController awakeFromNib]': ULTemplateViewController.m:253:12: warning: unused variable 'description' [-Wunused-variable] ULTemplateViewController.m: In function '-[ULTemplateViewController displayTemplate:]': ULTemplateViewController.m:319:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULTemplateViewController.m:327:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc ULConverter.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULConverter.m.o gcc ULExportController.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULExportController.m.o ULExportController.m: In function '-[ULExportController init]': ULExportController.m:52:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULExportController.m: In function '-[ULExportController _exportObjectAsBinaryArchive:toFile:]': ULExportController.m:122:6: warning: unused variable 'selectedRow' [-Wunused-variable] ULExportController.m: In function '-[ULExportController export:]': ULExportController.m:183:39: warning: variable 'extension' set but not used [-Wunused-but-set-variable] ULExportController.m:180:14: warning: unused variable 'index' [-Wunused-variable] ULExportController.m: In function '-[ULExportController exportObject:toFile:format:]': ULExportController.m:249:6: warning: unused variable 'selector' [-Wunused-variable] ULExportController.m: In function '-[ULExportController exportCurrentPasteboardObjectAs:]': ULExportController.m:327:35: warning: variable 'extension' set but not used [-Wunused-but-set-variable] ULExportController.m: In function '-[ULExportController(ChimeraAttributeFileCreation) _saveAttributeFile:]': ULExportController.m:423:11: warning: unused variable 'error' [-Wunused-variable] ULExportController.m: In function '-[ULExportController(ChimeraAttributeFileCreation) createAttributeFile:]': ULExportController.m:516:5: warning: unused variable 'attribute' [-Wunused-variable] ULExportController.m:514:16: warning: unused variable 'attributeEnum' [-Wunused-variable] ULExportController.m:512:49: warning: variable 'atomColName' set but not used [-Wunused-but-set-variable] ULExportController.m: In function '-[ULExportController exportObject:toFile:as:]': ULExportController.m:244:2: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc ULPreferences.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULPreferences.m.o ULPreferences.m: In function '-[ULPreferences initWithModelViewController:]': ULPreferences.m:50:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULPreferences.m: In function '-[ULPreferences _convertStringToArray:]': ULPreferences.m:195:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] ULPreferences.m: In function '-[ULPreferences setDefault:]': ULPreferences.m:257:4: warning: 'domainName' may be used uninitialized in this function [-Wmaybe-uninitialized] ULPreferences.m:247:2: warning: 'defaultName' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc ULDatabaseManager.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULDatabaseManager.m.o gcc ULInterfaceFunctions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULInterfaceFunctions.m.o gcc ULOutlineViewAdditions.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/ULOutlineViewAdditions.m.o gcc main.m -c \ -MMD -MP -DGNUSTEP -DGNUSTEP_BASE_LIBRARY=1 -DGNU_GUI_LIBRARY=1 -DGNU_RUNTIME=1 -DGNUSTEP_BASE_LIBRARY=1 -fno-strict-aliasing -fexceptions -fobjc-exceptions -D_NATIVE_OBJC_EXCEPTIONS -pthread -fPIC -Wall -DGSWARN -DGSDIAGNOSE -Wno-import -g -O2 -fgnu-runtime -fconstant-string-class=NSConstantString -I/tmp/buildd/adun.app-0.81 -I/tmp/buildd/adun.app-0.81/Kernel -I/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Headers -I. -I/usr/local/include/GNUstep -I/usr/include/GNUstep \ -o obj/UL.obj/main.m.o gcc -rdynamic -Wl,-z,defs -Wl,--as-needed -Wl,-rpath,/usr/lib/adun.app -pthread -shared-libgcc -fexceptions -fgnu-runtime -o UL.app/./UL \ ./obj/UL.obj/ViewController.m.o ./obj/UL.obj/ULSimulationCreator.m.o ./obj/UL.obj/ULPasteboard.m.o ./obj/UL.obj/ULStatusTable.m.o ./obj/UL.obj/ULViewControllerSimulationCommands.m.o ./obj/UL.obj/ULPropertiesPanel.m.o ./obj/UL.obj/ULOutlineViewDelegate.m.o ./obj/UL.obj/ULSystemViewController.m.o ./obj/UL.obj/ULDatabaseBrowser.m.o ./obj/UL.obj/ULDatabaseBrowserDataDisplay.m.o ./obj/UL.obj/ULAnalyser.m.o ./obj/UL.obj/ULAnalyserPluginExtensions.m.o ./obj/UL.obj/ULAnalyserGnuplotExtensions.m.o ./obj/UL.obj/ULAnalyserDataSetView.m.o ./obj/UL.obj/ULProgressPanel.m.o ./obj/UL.obj/ULExportPanel.m.o ./obj/UL.obj/ULTemplateViewController.m.o ./obj/UL.obj/ULConverter.m.o ./obj/UL.obj/ULExportController.m.o ./obj/UL.obj/ULPreferences.m.o ./obj/UL.obj/ULDatabaseManager.m.o ./obj/UL.obj/ULInterfaceFunctions.m.o ./obj/UL.obj/ULOutlineViewAdditions.m.o ./obj/UL.obj/main.m.o -L/opt/intel/lib -L/usr/local/lib -L/tmp/buildd/adun.app-0.81/MolTalk/MolTalk.framework/Versions/Current -L/tmp/buildd/adun.app-0.81/Kernel/Base/obj -L/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/AdunKernel.framework/Versions/Current -L./XMLLib/obj -L. -L./ULFramework/ULFramework.framework/Versions/Current -L/usr/local/lib -L/usr/lib -lXMLLib -lULFramework -lAdunKernel -lMolTalk -ladun_base -lgnustep-gui -lgnustep-base -lpthread -lobjc -lm /usr/share/GNUstep/Makefiles/mkinstalldirs UL.app/Resources echo "OLD_GNUSTEP_STAMP_ASTRING = _NSApplication---" > ./UL.app/stamp.make (echo "{"; echo ' NOTE = "Automatically generated, do not edit!";'; \ echo " NSExecutable = \"UL\";"; \ echo " NSMainNibFile = \"\";"; \ echo " GSMainMarkupFile = \"\";"; \ if [ "" != "" ]; then \ echo " NSIcon = \"\";"; \ fi; \ echo " NSPrincipalClass = \"NSApplication\";"; \ echo "}") >UL.app/Resources/Info-gnustep.plist if [ -r "ULInfo.plist" ]; then \ plmerge UL.app/Resources/Info-gnustep.plist "ULInfo.plist"; \ fi pl2link UL.app/Resources/Info-gnustep.plist ./UL.app/Resources/UL.desktop; \ chmod a+x ./UL.app/Resources/UL.desktop for f in Resources/UL.gorm Resources/Options.gorm Resources/System.gorm Resources/Converter.gorm Resources/ProgressPanel.gorm Resources/ExportPanel.gorm Resources/CreateAttributePanel.gorm Resources/Results.gorm Resources/Template.gorm Resources/Preferences.gorm Resources/DatabasePanel.gorm Resources/Info-gnustep.plist Resources/defaultOptions.plist Resources/H2O.pdb Resources/splash.tiff Resources/document-save.png Resources/dataset-close.png Resources/apply.png Resources/reload.png Resources/export.png Resources/icon.tiff Resources/QuickStartFiles; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./UL.app/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done make[1]: Leaving directory `/tmp/buildd/adun.app-0.81/UL' convert UL/Resources/icon.tiff -resize 32x32 adun.xpm touch build-stamp fakeroot debian/rules binary dh_testdir dh_testroot dh_prep dh_installdirs usr/lib/adun.app /usr/bin/make install messages=yes DESTDIR=/tmp/buildd/adun.app-0.81/debian/adun.app \ GNUSTEP_SYSTEM_LIBRARIES=/usr/lib/adun.app \ GNUSTEP_INSTALLATION_DOMAIN=SYSTEM This is gnustep-make 2.6.2. Type 'make print-gnustep-make-help' for help. make[1]: Entering directory `/tmp/buildd/adun.app-0.81' Making all in Kernel/ ... make[2]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel' Making all in Base ... make[3]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/Base' Making all for library libadun_base... make[6]: Nothing to be done for `internal-library-compile'. make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/Base' Making all in AdunKernel ... make[3]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel' Making build-headers in subprojects of framework AdunKernel... make[4]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' Making build-headers for subproject Framework... make[5]: Nothing to be done for `internal-subproject-build-headers'. make[4]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' make[4]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making build-headers in subprojects of subproject CoreAdditions... make[5]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making build-headers for subproject CoreCommands... make[6]: Nothing to be done for `internal-subproject-build-headers'. make[5]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making build-headers for subproject CoreAdditions... make[5]: Nothing to be done for `internal-subproject-build-headers'. make[4]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making build-headers for framework AdunKernel... cd ./AdunKernel.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "AdunKernel" ]; then \ rm -f ./AdunKernel; \ ln -s ../AdunKernel.framework/Headers \ ./AdunKernel; \ fi Making all in subprojects of framework AdunKernel... make[4]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' Making all for subproject Framework... make[6]: Nothing to be done for `internal-subproject-compile'. make[4]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' make[4]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making all in subprojects of subproject CoreAdditions... make[5]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making all for subproject CoreCommands... make[7]: Nothing to be done for `internal-subproject-compile'. make[5]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making all for subproject CoreAdditions... make[6]: Nothing to be done for `internal-subproject-compile'. make[4]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making all for framework AdunKernel... make[5]: Nothing to be done for `internal-framework-compile'. for f in Resources/ScriptingInfo.plist Resources/GBSWData/; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./AdunKernel.framework/Versions/0/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done for subproject in Framework/ CoreAdditions/; do \ if [ -d $subproject/Resources/Subproject ]; then \ for f in $subproject/Resources/Subproject/*; do \ if [ $f != $subproject'/Resources/Subproject/*' ]; then \ cp -fr $f ./AdunKernel.framework/Versions/0/Resources/; \ fi; \ done; \ fi; \ done make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel' Making all for tool AdunCore... make[5]: Nothing to be done for `internal-tool-compile'. make[2]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel' Making all in MolTalk/ ... make[2]: Entering directory `/tmp/buildd/adun.app-0.81/MolTalk' Making build-headers for framework MolTalk... cd ./MolTalk.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "MolTalk" ]; then \ rm -f ./MolTalk; \ ln -s ../MolTalk.framework/Headers \ ./MolTalk; \ fi Making all for framework MolTalk... make[4]: Nothing to be done for `internal-framework-compile'. for f in Resources/ScriptingInfo.plist; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./MolTalk.framework/Versions/3/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done make[2]: Leaving directory `/tmp/buildd/adun.app-0.81/MolTalk' Making all in UL/ ... make[2]: Entering directory `/tmp/buildd/adun.app-0.81/UL' Making all in XMLLib ... make[3]: Entering directory `/tmp/buildd/adun.app-0.81/UL/XMLLib' Making all for library libXMLLib... make[6]: Nothing to be done for `internal-library-compile'. make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/UL/XMLLib' Making all in ULFramework ... make[3]: Entering directory `/tmp/buildd/adun.app-0.81/UL/ULFramework' Making build-headers for framework ULFramework... cd ./ULFramework.framework; \ if [ ! -h "Resources" ]; then \ rm -f Resources; \ ln -s Versions/Current/Resources Resources; \ fi; \ if [ ! -h "Headers" ]; then \ rm -f Headers; \ ln -s Versions/Current/Headers Headers; \ fi cd ./derived_src; \ if [ ! -h "ULFramework" ]; then \ rm -f ./ULFramework; \ ln -s ../ULFramework.framework/Headers \ ./ULFramework; \ fi Making all for framework ULFramework... make[5]: Nothing to be done for `internal-framework-compile'. for f in Resources/ScriptingInfo.plist Resources/objectTemplates.plist Resources/pdbBuilderOptions.plist Resources/pdbNameMap.plist Resources/iupacPdbMap.plist Resources/Version Resources/ForceFields; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./ULFramework.framework/Versions/0/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/UL/ULFramework' Making all in AdunServer ... make[3]: Entering directory `/tmp/buildd/adun.app-0.81/UL/AdunServer' Making all for tool AdunServer... make[6]: Nothing to be done for `internal-tool-compile'. make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/UL/AdunServer' Making all for app UL... make[5]: Nothing to be done for `internal-app-compile'. for f in Resources/UL.gorm Resources/Options.gorm Resources/System.gorm Resources/Converter.gorm Resources/ProgressPanel.gorm Resources/ExportPanel.gorm Resources/CreateAttributePanel.gorm Resources/Results.gorm Resources/Template.gorm Resources/Preferences.gorm Resources/DatabasePanel.gorm Resources/Info-gnustep.plist Resources/defaultOptions.plist Resources/H2O.pdb Resources/splash.tiff Resources/document-save.png Resources/dataset-close.png Resources/apply.png Resources/reload.png Resources/export.png Resources/icon.tiff Resources/QuickStartFiles; do \ if [ -f $f -o -d $f ]; then \ cp -fr $f ./UL.app/Resources/; \ else \ echo "Warning: $f not found - ignoring"; \ fi; \ done make[2]: Leaving directory `/tmp/buildd/adun.app-0.81/UL' Making install in Kernel/ ... make[2]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel' Making install in Base ... make[3]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/Base' Making install for library libadun_base... if [ -f ./obj/libadun_base.so.0.0.1 ]; then \ /usr/bin/install -c -p ./obj/libadun_base.so.0.0.1 \ /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. ; \ (cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/.; rm -f libadun_base.so; if [ "libadun_base.so.0" != "libadun_base.so.0.0.1" ]; then rm -f libadun_base.so.0; ln -s libadun_base.so.0.0.1 libadun_base.so.0; fi; ln -s libadun_base.so.0 libadun_base.so; ) \ fi /usr/share/GNUstep/Makefiles/mkinstalldirs /tmp/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep//Base for file in AdForceFieldFunctions.h AdGeneralizedBornFunctions.h AdMatrix.h AdQuaternion.h AdSorter.h AdVector.h AdQuadratureFunctions.h AdVolumeFunctions.h AdBaseFunctions.h AdLinkedList.h __done; do \ if [ $file != __done ]; then \ /usr/bin/install -c -p -m 644 ./$file \ /tmp/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep//Base/$file; \ fi; \ done make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/Base' Making install in AdunKernel ... make[3]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel' /usr/share/GNUstep/Makefiles/mkinstalldirs /tmp/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep/Framework/Protocols Making install in subprojects of framework AdunKernel... make[4]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' Making install for subproject Framework... make[5]: Nothing to be done for `internal-subproject-install'. make[4]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/Framework' make[4]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making install in subprojects of subproject CoreAdditions... make[5]: Entering directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making install for subproject CoreCommands... make[6]: Nothing to be done for `internal-subproject-install'. make[5]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions/Commands' Making install for subproject CoreAdditions... make[5]: Nothing to be done for `internal-subproject-install'. make[4]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel/CoreAdditions' Making install for framework AdunKernel... /usr/share/GNUstep/Makefiles/mkinstalldirs /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks rm -rf /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/AdunKernel.framework; \ (cd .; tar cfX - /usr/share/GNUstep/Makefiles/tar-exclude-list AdunKernel.framework) | (cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks; tar xf -) cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep; \ rm -f AdunKernel; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Headers short` AdunKernel; \ cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/.; \ rm -f libAdunKernel.so; \ rm -f libAdunKernel.so.0; \ rm -f libAdunKernel.so.0.13; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/Current/./libAdunKernel.so short` libAdunKernel.so; \ if test -r "/tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/Current/./libAdunKernel.so.0"; then \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/Current/./libAdunKernel.so.0 short` libAdunKernel.so.0; \ fi; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/Current/./libAdunKernel.so.0.13 short` libAdunKernel.so.0.13 make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel/AdunKernel' Making install for tool AdunCore... /usr/share/GNUstep/Makefiles/mkinstalldirs /tmp/buildd/adun.app-0.81/debian/adun.app//usr/bin/. /usr/bin/install -c -p -m 0755 \ ./obj/AdunCore \ /tmp/buildd/adun.app-0.81/debian/adun.app//usr/bin/. /usr/share/GNUstep/Makefiles/mkinstalldirs /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Tools/Resources rm -rf /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Tools/Resources/AdunCore; \ (cd ./Resources; \ tar chfX - /usr/share/GNUstep/Makefiles/tar-exclude-list AdunCore) \ | (cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Tools/Resources; tar xf -) make[2]: Leaving directory `/tmp/buildd/adun.app-0.81/Kernel' Making install in MolTalk/ ... make[2]: Entering directory `/tmp/buildd/adun.app-0.81/MolTalk' Making install for framework MolTalk... rm -rf /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/MolTalk.framework; \ (cd .; tar cfX - /usr/share/GNUstep/Makefiles/tar-exclude-list MolTalk.framework) | (cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks; tar xf -) cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep; \ rm -f MolTalk; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/MolTalk.framework/Headers short` MolTalk; \ cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/.; \ rm -f libMolTalk.so; \ rm -f libMolTalk.so.3; \ rm -f libMolTalk.so.3.0.1; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/Current/./libMolTalk.so short` libMolTalk.so; \ if test -r "/tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/Current/./libMolTalk.so.3"; then \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/Current/./libMolTalk.so.3 short` libMolTalk.so.3; \ fi; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/Current/./libMolTalk.so.3.0.1 short` libMolTalk.so.3.0.1 make[2]: Leaving directory `/tmp/buildd/adun.app-0.81/MolTalk' Making install in UL/ ... make[2]: Entering directory `/tmp/buildd/adun.app-0.81/UL' Making install in XMLLib ... make[3]: Entering directory `/tmp/buildd/adun.app-0.81/UL/XMLLib' Making install for library libXMLLib... if [ -f ./obj/libXMLLib.so.0.1 ]; then \ /usr/bin/install -c -p ./obj/libXMLLib.so.0.1 \ /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. ; \ (cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/.; rm -f libXMLLib.so; if [ "libXMLLib.so.0" != "libXMLLib.so.0.1" ]; then rm -f libXMLLib.so.0; ln -s libXMLLib.so.0.1 libXMLLib.so.0; fi; ln -s libXMLLib.so.0 libXMLLib.so; ) \ fi /usr/share/GNUstep/Makefiles/mkinstalldirs /tmp/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep//XMLLib for file in XMLDocumentRoot.h XMLNode.h XMLLib.h ULParameterNode.h ULTopologyNode.h ULClassNode.h ULInteractionNode.h ULParameterTree.h ULMolecularLibraryNode.h ULMoleculeClassNode.h ULMoleculeNode.h ULConnectivityNode.h ULAtomListNode.h ULMolecularLibraryTree.h __done; do \ if [ $file != __done ]; then \ /usr/bin/install -c -p -m 644 ./$file \ /tmp/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep//XMLLib/$file; \ fi; \ done make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/UL/XMLLib' Making install in ULFramework ... make[3]: Entering directory `/tmp/buildd/adun.app-0.81/UL/ULFramework' Making install for framework ULFramework... rm -rf /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/ULFramework.framework; \ (cd .; tar cfX - /usr/share/GNUstep/Makefiles/tar-exclude-list ULFramework.framework) | (cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks; tar xf -) cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep; \ rm -f ULFramework; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/include/GNUstep /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/ULFramework.framework/Headers short` ULFramework; \ cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/.; \ rm -f libULFramework.so; \ rm -f libULFramework.so.0; \ rm -f libULFramework.so.0.6; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/Current/./libULFramework.so short` libULFramework.so; \ if test -r "/tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/Current/./libULFramework.so.0"; then \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/Current/./libULFramework.so.0 short` libULFramework.so.0; \ fi; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/adun.app/. /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/Current/./libULFramework.so.0.6 short` libULFramework.so.0.6 make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/UL/ULFramework' Making install in AdunServer ... make[3]: Entering directory `/tmp/buildd/adun.app-0.81/UL/AdunServer' Making install for tool AdunServer... /usr/bin/install -c -p -m 0755 \ ./obj/AdunServer \ /tmp/buildd/adun.app-0.81/debian/adun.app//usr/bin/. make[3]: Leaving directory `/tmp/buildd/adun.app-0.81/UL/AdunServer' Making install for app UL... /usr/share/GNUstep/Makefiles/mkinstalldirs /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Applications rm -rf /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Applications/UL.app; \ (cd ./.; \ tar chfX - /usr/share/GNUstep/Makefiles/tar-exclude-list UL.app) \ | (cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Applications; tar xf -) \ cd /tmp/buildd/adun.app-0.81/debian/adun.app//usr/bin/.; \ rm -f UL; \ ln -s `/usr/share/GNUstep/Makefiles/relative_path.sh /tmp/buildd/adun.app-0.81/debian/adun.app//usr/bin/. /tmp/buildd/adun.app-0.81/debian/adun.app//usr/lib/GNUstep/Applications/UL.app/./UL short` \ UL make[2]: Leaving directory `/tmp/buildd/adun.app-0.81/UL' make[1]: Leaving directory `/tmp/buildd/adun.app-0.81' find /tmp/buildd/adun.app-0.81/debian/adun.app/usr/lib/GNUstep/Applications/UL.app/Resources \ -type f -exec chmod -x '{}' \; chmod -x /tmp/buildd/adun.app-0.81/debian/adun.app/usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/Resources/ForceFields/Enzymix/*.ffml rm -r /tmp/buildd/adun.app-0.81/debian/adun.app/usr/include/GNUstep/Framework \ /tmp/buildd/adun.app-0.81/debian/adun.app/usr/lib/GNUstep/Tools rm /tmp/buildd/adun.app-0.81/debian/adun.app/usr/lib/GNUstep/Applications/*.app/Resources/*.desktop install -D -m 644 debian/*.desktop \ /tmp/buildd/adun.app-0.81/debian/adun.app/usr/share/applications/UL.desktop dh_install adun.xpm usr/share/pixmaps/ dh_testdir dh_testroot dh_installchangelogs dh_installdocs dh_installmenu dh_installman dh_link gsdh_gnustep dh_installdirs usr/share/GNUstep mv /tmp/buildd/adun.app-0.81/debian/adun.app/usr/lib/GNUstep/Applications/UL.app/Resources \ /tmp/buildd/adun.app-0.81/debian/adun.app/usr/share/GNUstep/UL.app dh_link usr/share/GNUstep/UL.app \ /usr/lib/GNUstep/Applications/UL.app/Resources dh_strip dh_compress dh_fixperms dh_installdeb dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/adun.app/usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13 was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/adun.app/usr/lib/adun.app/libadun_base.so.0.0.1 was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package `adun.app' in `../adun.app_0.81-6_amd64.deb'. dpkg-genchanges >../adun.app_0.81-6_amd64.changes dpkg-genchanges: not including original source code in upload dpkg-source --after-build adun.app-0.81 dpkg-source: info: unapplying fix-implicit-pointer.patch dpkg-source: info: unapplying 20_paths.patch dpkg-source: info: unapplying 15_link-properly.patch dpkg-source: info: unapplying 05_no-plugin-script.patch dpkg-buildpackage: binary and diff upload (original source NOT included) I: Copying back the cached apt archive contents I: unmounting dev/pts filesystem I: unmounting run/shm filesystem I: unmounting proc filesystem I: cleaning the build env I: removing directory /var/cache/pbuilder/build//31138 and its subdirectories I: Current time: Tue Mar 26 11:23:56 CET 2013 I: pbuilder-time-stamp: 1364293436 Could not read the .changes file: /sw/debian-med/trunk/packages/adun.app/build-area/. rm -rf /sw/debian-med/trunk/packages/adun.app/build-area/adun.app-0.81