origdir = ../tarballs /home/sw/bin/buildPackage: line 17: .svn/deb-layout: No such file or directory Complete layout information: buildArea=/sw/debian-med/trunk/packages/acedb/build-area origDir=/sw/debian-med/trunk/packages/acedb/tarballs tagsDir=/sw/debian-med/trunk/packages/acedb/tags tagsUrl=svn://svn.debian.org/svn/debian-med/trunk/packages/acedb/tags trunkDir=/sw/debian-med/trunk/packages/acedb/trunk trunkUrl=svn://svn.debian.org/svn/debian-med/trunk/packages/acedb/trunk UNRELEASED tag found - you don't want to release with it, do you? mergeWithUpstream mode detected, looking for /sw/debian-med/trunk/packages/acedb/tarballs/acedb_4.9.39+dfsg.01.orig.tar.gz I: mergeWithUpstream property set, looking for upstream source tarball... tar --no-same-owner --no-same-permissions --extract --gzip --file /sw/debian-med/trunk/packages/acedb/tarballs/acedb_4.9.39+dfsg.01.orig.tar.gz --directory <1 more argument> mv /sw/debian-med/trunk/packages/acedb/build-area/tmp-0.755830367402272/acedb_4.9.39+dfsg.01 /sw/debian-med/trunk/packages/acedb/build-area/acedb-4.9.39+dfsg.01 mkdir -p /sw/debian-med/trunk/packages/acedb/build-area/acedb-4.9.39+dfsg.01/debian/patches /sw/debian-med/trunk/packages/acedb/build-area/acedb-4.9.39+dfsg.01/debian <1 more argument> cp --parents -laf debian/patches/dotter_help.patch debian/copyright debian/acedb-other-dotter.manpages debian/patches/efetch_help.patch debian/dirs debian/README.Debian <22 more arguments> rm -rf /sw/debian-med/trunk/packages/acedb/build-area/tmp-0.755830367402272 chmod -R u+r+w+X,g+r-w+X,o+r-w+X -- /sw/debian-med/trunk/packages/acedb/build-area/acedb-4.9.39+dfsg.01 /bin/sh -c pdebuild --buildresult /sw/packages/build-area -- --basetgz /var/cache/pbuilder/base-sid-amd64.tgz --architecture amd64 --distribution sid W: /home/sw/.pbuilderrc does not exist dpkg-buildpackage: source package acedb dpkg-buildpackage: source version 4.9.39+dfsg.01-6 dpkg-buildpackage: source changed by Andreas Tille dpkg-source --before-build acedb-4.9.39+dfsg.01 dpkg-source: info: applying blxview_gtk_namespace_conflict.patch dpkg-source: info: applying belvu_help.patch dpkg-source: info: applying efetch_help.patch dpkg-source: info: applying dotter_help.patch dpkg-source: info: applying binutils-gold.patch dpkg-source: info: applying no-curses.patch fakeroot debian/rules clean QUILT_PATCHES=debian/patches \ quilt --quiltrc /dev/null pop -a -R || test $? = 2 Removing patch no-curses.patch Restoring wmake/LINUX_4_DEF Restoring wmake/LINUX_64_DEF Removing patch binutils-gold.patch Restoring wmake/LINUX_4_DEF Restoring wmake/LINUX_64_DEF Removing patch dotter_help.patch Restoring w9/dotterMain.c Removing patch efetch_help.patch Restoring w9/efetch.c Removing patch belvu_help.patch Restoring w9/belvu.c Removing patch blxview_gtk_namespace_conflict.patch Restoring w9/blxview.c No patches applied rm -rf .pc debian/stamp-patched dh_testdir dh_testroot rm -f build-arch-stamp build-indep-stamp configure-stamp rm -fr bin.LINUX_4 #/usr/bin/make clean dh_clean bin dpkg-source -b acedb-4.9.39+dfsg.01 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: applying blxview_gtk_namespace_conflict.patch dpkg-source: info: applying belvu_help.patch dpkg-source: info: applying efetch_help.patch dpkg-source: info: applying dotter_help.patch dpkg-source: info: applying binutils-gold.patch dpkg-source: info: applying no-curses.patch dpkg-source: info: building acedb using existing ./acedb_4.9.39+dfsg.01.orig.tar.gz dpkg-source: info: building acedb in acedb_4.9.39+dfsg.01-6.debian.tar.gz dpkg-source: info: building acedb in acedb_4.9.39+dfsg.01-6.dsc dpkg-genchanges -S >../acedb_4.9.39+dfsg.01-6_source.changes dpkg-genchanges: not including original source code in upload dpkg-source --after-build acedb-4.9.39+dfsg.01 dpkg-source: info: unapplying no-curses.patch dpkg-source: info: unapplying binutils-gold.patch dpkg-source: info: unapplying dotter_help.patch dpkg-source: info: unapplying efetch_help.patch dpkg-source: info: unapplying belvu_help.patch dpkg-source: info: unapplying blxview_gtk_namespace_conflict.patch dpkg-buildpackage: binary and diff upload (original source NOT included) W: /home/sw/.pbuilderrc does not exist I: using fakeroot in build. I: Current time: Tue Mar 26 10:34:13 CET 2013 I: pbuilder-time-stamp: 1364290453 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/base-sid-amd64.tgz] I: creating local configuration I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /run/shm filesystem I: mounting /dev/pts filesystem I: policy-rc.d already exists I: Obtaining the cached apt archive contents I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 8), libreadline-dev, libglib2.0-dev, libgtk2.0-dev, quilt, pkg-config, csh, flex, bison dpkg-deb: building package `pbuilder-satisfydepends-dummy' in `/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 12010 files and directories currently installed.) Unpacking pbuilder-satisfydepends-dummy (from .../pbuilder-satisfydepends-dummy.deb) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 8); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libreadline-dev; however: Package libreadline-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtk2.0-dev; however: Package libgtk2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on quilt; however: Package quilt is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on csh; however: Package csh is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... The following NEW packages will be installed: bison{a} bsdmainutils{a} csh{a} debhelper{a} diffstat{a} file{a} flex{a} fontconfig{a} fontconfig-config{a} gettext{a} gettext-base{a} gir1.2-atk-1.0{a} gir1.2-freedesktop{a} gir1.2-gdkpixbuf-2.0{a} gir1.2-glib-2.0{a} gir1.2-pango-1.0{a} groff-base{a} html2text{a} intltool-debian{a} libasprintf-dev{a} libasprintf0c2{a} libatk1.0-0{a} libatk1.0-data{a} libatk1.0-dev{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbison-dev{a} libbsd0{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcroco3{a} libcups2{a} libdatrie1{a} libdbus-1-3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libffi5{a} libfontconfig1{a} libfontconfig1-dev{a} libfreetype6{a} libfreetype6-dev{a} libgcrypt11{a} libgdk-pixbuf2.0-0{a} libgdk-pixbuf2.0-common{a} libgdk-pixbuf2.0-dev{a} libgettextpo-dev{a} libgettextpo0{a} libgirepository-1.0-1{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libgnutls26{a} libgpg-error0{a} libgssapi-krb5-2{a} libgtk2.0-0{a} libgtk2.0-common{a} libgtk2.0-dev{a} libice-dev{a} libice6{a} libjasper1{a} libjbig0 libjpeg8{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic1{a} libp11-kit0{a} libpango1.0-0{a} libpango1.0-dev{a} libpcre3{a} libpcre3-dev{a} libpcrecpp0{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpng12-0{a} libpng12-dev{a} libpopt0{a} libpthread-stubs0{a} libpthread-stubs0-dev{a} libreadline-dev{a} libreadline6-dev{a} libsigsegv2{a} libsm-dev{a} libsm6{a} libtasn1-3{a} libthai-data{a} libthai0{a} libtiff4{a} libtinfo-dev{a} libunistring0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb1{a} libxcb1-dev{a} libxcomposite-dev{a} libxcomposite1{a} libxcursor-dev{a} libxcursor1{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxft-dev{a} libxft2{a} libxi-dev{a} libxi6{a} libxinerama-dev{a} libxinerama1{a} libxml2{a} libxml2-utils{a} libxrandr-dev{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} m4{a} man-db{a} pkg-config{a} po-debconf{a} quilt{a} shared-mime-info{a} ttf-dejavu-core{a} x11-common{a} x11proto-composite-dev{a} x11proto-core-dev{a} x11proto-damage-dev{a} x11proto-fixes-dev{a} x11proto-input-dev{a} x11proto-kb-dev{a} x11proto-randr-dev{a} x11proto-render-dev{a} x11proto-xext-dev{a} x11proto-xinerama-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} 0 packages upgraded, 153 newly installed, 0 to remove and 0 not upgraded. Need to get 4038 kB/46.8 MB of archives. After unpacking 159 MB will be used. Writing extended state information... Get: 1 http://sid-approx.alteholz.net/debian/ sid/main libgcrypt11 amd64 1.5.0-5 [299 kB] Get: 2 http://sid-approx.alteholz.net/debian/ sid/main libgnutls26 amd64 2.12.20-5 [617 kB] Get: 3 http://sid-approx.alteholz.net/debian/ sid/main libkeyutils1 amd64 1.5.5-6 [8740 B] Get: 4 http://sid-approx.alteholz.net/debian/ sid/main libkrb5support0 amd64 1.10.1+dfsg-4+nmu1 [49.4 kB] Get: 5 http://sid-approx.alteholz.net/debian/ sid/main libk5crypto3 amd64 1.10.1+dfsg-4+nmu1 [112 kB] Get: 6 http://sid-approx.alteholz.net/debian/ sid/main libkrb5-3 amd64 1.10.1+dfsg-4+nmu1 [394 kB] Get: 7 http://sid-approx.alteholz.net/debian/ sid/main libgssapi-krb5-2 amd64 1.10.1+dfsg-4+nmu1 [148 kB] Get: 8 http://sid-approx.alteholz.net/debian/ sid/main m4 amd64 1.4.16-5 [260 kB] Get: 9 http://sid-approx.alteholz.net/debian/ sid/main libavahi-common-data amd64 0.6.31-2 [135 kB] Get: 10 http://sid-approx.alteholz.net/debian/ sid/main libavahi-common3 amd64 0.6.31-2 [54.6 kB] Get: 11 http://sid-approx.alteholz.net/debian/ sid/main libavahi-client3 amd64 0.6.31-2 [59.5 kB] Get: 12 http://sid-approx.alteholz.net/debian/ sid/main libpixman-1-0 amd64 0.26.0-4 [427 kB] Get: 13 http://sid-approx.alteholz.net/debian/ sid/main libcups2 amd64 1.5.3-5 [256 kB] Get: 14 http://sid-approx.alteholz.net/debian/ sid/main x11-common all 1:7.7+2 [284 kB] Get: 15 http://sid-approx.alteholz.net/debian/ sid/main libpixman-1-dev amd64 0.26.0-4 [457 kB] Get: 16 http://sid-approx.alteholz.net/debian/ sid/main libxml2-utils amd64 2.8.0+dfsg1-7+nmu1 [96.5 kB] Get: 17 http://sid-approx.alteholz.net/debian/ sid/main quilt all 0.60-8 [381 kB] Fetched 4038 kB in 12s (323 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:amd64. (Reading database ... 12010 files and directories currently installed.) Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.2-2_amd64.deb) ... Selecting previously unselected package libpopt0:amd64. Unpacking libpopt0:amd64 (from .../libpopt0_1.16-7_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-1_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.4_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.3-3_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-10_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3.1_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. 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Unpacking libkrb5-3:amd64 (from .../libkrb5-3_1.10.1+dfsg-4+nmu1_amd64.deb) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Unpacking libgssapi-krb5-2:amd64 (from .../libgssapi-krb5-2_1.10.1+dfsg-4+nmu1_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_1%3a5.11-2.1_amd64.deb) ... Selecting previously unselected package libpcre3:amd64. Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.31-2_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-7+nmu1_amd64.deb) ... Selecting previously unselected package libsigsegv2. Unpacking libsigsegv2 (from .../libsigsegv2_2.9-4_amd64.deb) ... Selecting previously unselected package m4. Unpacking m4 (from .../archives/m4_1.4.16-5_amd64.deb) ... Selecting previously unselected package flex. Unpacking flex (from .../flex_2.5.35-10.1_amd64.deb) ... 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Selecting previously unselected package libavahi-client3:amd64. Unpacking libavahi-client3:amd64 (from .../libavahi-client3_0.6.31-2_amd64.deb) ... Selecting previously unselected package libbsd0:amd64. Unpacking libbsd0:amd64 (from .../libbsd0_0.4.2-1_amd64.deb) ... Selecting previously unselected package libexpat1:amd64. Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-1_amd64.deb) ... Selecting previously unselected package libfreetype6:amd64. Unpacking libfreetype6:amd64 (from .../libfreetype6_2.4.9-1.1_amd64.deb) ... Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-3_all.deb) ... Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.9.0-7.1_all.deb) ... Selecting previously unselected package libfontconfig1:amd64. Unpacking libfontconfig1:amd64 (from .../libfontconfig1_2.9.0-7.1_amd64.deb) ... Selecting previously unselected package libpixman-1-0:amd64. Unpacking libpixman-1-0:amd64 (from .../libpixman-1-0_0.26.0-4_amd64.deb) ... Selecting previously unselected package libpng12-0:amd64. Unpacking libpng12-0:amd64 (from .../libpng12-0_1.2.49-3_amd64.deb) ... Selecting previously unselected package libxau6:amd64. Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ... Selecting previously unselected package libxdmcp6:amd64. Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ... Selecting previously unselected package libxcb1:amd64. Unpacking libxcb1:amd64 (from .../libxcb1_1.8.1-2_amd64.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.5.0-1_all.deb) ... Selecting previously unselected package libx11-6:amd64. Unpacking libx11-6:amd64 (from .../libx11-6_2%3a1.5.0-1_amd64.deb) ... Selecting previously unselected package libxcb-render0:amd64. 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Selecting previously unselected package libice6:amd64. Unpacking libice6:amd64 (from .../libice6_2%3a1.0.8-2_amd64.deb) ... Selecting previously unselected package libpcrecpp0:amd64. Unpacking libpcrecpp0:amd64 (from .../libpcrecpp0_1%3a8.31-2_amd64.deb) ... Selecting previously unselected package libsm6:amd64. Unpacking libsm6:amd64 (from .../libsm6_2%3a1.2.1-2_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_1%3a5.11-2.1_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-10_amd64.deb) ... Selecting previously unselected package libbison-dev:amd64. Unpacking libbison-dev:amd64 (from .../libbison-dev_2%3a2.5.dfsg-3_amd64.deb) ... Selecting previously unselected package bison. Unpacking bison (from .../bison_2%3a2.5.dfsg-3_amd64.deb) ... Selecting previously unselected package csh. Unpacking csh (from .../csh_20110502-2_amd64.deb) ... 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Unpacking libreadline-dev:amd64 (from .../libreadline-dev_6.2+dfsg-0.1_amd64.deb) ... Selecting previously unselected package quilt. Unpacking quilt (from .../archives/quilt_0.60-8_all.deb) ... Setting up libpipeline1:amd64 (1.2.2-2) ... Setting up libpopt0:amd64 (1.16-7) ... Setting up groff-base (1.22.2-1) ... Setting up bsdmainutils (9.0.4) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.3-3) ... Building database of manual pages ... Setting up libasprintf0c2:amd64 (0.18.1.1-10) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-5) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2) ... Setting up libgnutls26:amd64 (2.12.20-5) ... Setting up libkeyutils1:amd64 (1.5.5-6) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-4+nmu1) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-4+nmu1) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-4+nmu1) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-4+nmu1) ... Setting up libmagic1:amd64 (1:5.11-2.1) ... Setting up libpcre3:amd64 (1:8.31-2) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7+nmu1) ... Setting up libsigsegv2 (2.9-4) ... Setting up m4 (1.4.16-5) ... Setting up flex (2.5.35-10.1) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libglib2.0-0:amd64 (2.33.12+really2.32.4-5) ... No schema files found: doing nothing. Setting up libatk1.0-data (2.4.0-2) ... Setting up libatk1.0-0:amd64 (2.4.0-2) ... Setting up libavahi-common-data:amd64 (0.6.31-2) ... Setting up libavahi-common3:amd64 (0.6.31-2) ... Setting up libdbus-1-3:amd64 (1.6.8-1) ... Setting up libavahi-client3:amd64 (0.6.31-2) ... Setting up libbsd0:amd64 (0.4.2-1) ... Setting up libexpat1:amd64 (2.1.0-1) ... Setting up libfreetype6:amd64 (2.4.9-1.1) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libpixman-1-0:amd64 (0.26.0-4) ... Setting up libpng12-0:amd64 (1.2.49-3) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2) ... Setting up libx11-data (2:1.5.0-1) ... Setting up libx11-6:amd64 (2:1.5.0-1) ... Setting up libxcb-render0:amd64 (1.8.1-2) ... Setting up libxcb-shm0:amd64 (1.8.1-2) ... Setting up libxrender1:amd64 (1:0.9.7-1) ... Setting up libcairo2:amd64 (1.12.2-3) ... Setting up libcairo-gobject2:amd64 (1.12.2-3) ... Setting up libcairo-script-interpreter2:amd64 (1.12.2-3) ... Setting up libcroco3:amd64 (0.6.6-2) ... Setting up libcups2:amd64 (1.5.3-5) ... Setting up libdatrie1:amd64 (0.2.5-3) ... Setting up libelf1:amd64 (0.153-2) ... Setting up libjpeg8:amd64 (8d-1) ... Setting up libjasper1:amd64 (1.900.1-14) ... Setting up libjbig0:amd64 (2.0-2) ... Setting up libtiff4:amd64 (3.9.6-11) ... Setting up libgdk-pixbuf2.0-common (2.26.1-1) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.26.1-1) ... Setting up libunistring0:amd64 (0.9.3-5) ... Setting up libgettextpo0:amd64 (0.18.1.1-10) ... Setting up libglib2.0-data (2.33.12+really2.32.4-5) ... Setting up libglib2.0-bin (2.33.12+really2.32.4-5) ... Setting up libgtk2.0-common (2.24.10-2) ... Setting up libthai-data (0.1.18-2) ... Setting up libthai0:amd64 (0.1.18-2) ... Setting up libxft2:amd64 (2.3.1-1) ... Setting up fontconfig (2.9.0-7.1) ... Regenerating fonts cache... done. Setting up libpango1.0-0:amd64 (1.30.0-1) ... Setting up libxcomposite1:amd64 (1:0.4.3-2) ... Setting up libxfixes3:amd64 (1:5.0-4) ... Setting up libxcursor1:amd64 (1:1.1.13-1) ... Setting up libxdamage1:amd64 (1:1.1.3-2) ... Setting up libxext6:amd64 (2:1.3.1-2) ... Setting up libxi6:amd64 (2:1.6.1-1) ... Setting up libxinerama1:amd64 (2:1.1.2-1) ... Setting up libxrandr2:amd64 (2:1.3.2-2) ... Setting up shared-mime-info (1.0-1+b1) ... Setting up libgtk2.0-0:amd64 (2.24.10-2) ... Setting up x11-common (1:7.7+2) ... Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libpcrecpp0:amd64 (1:8.31-2) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up file (1:5.11-2.1) ... Setting up gettext-base (0.18.1.1-10) ... Setting up libbison-dev:amd64 (2:2.5.dfsg-3) ... Setting up bison (2:2.5.dfsg-3) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up csh (20110502-2) ... update-alternatives: using /bin/bsd-csh to provide /bin/csh (csh) in auto mode Setting up html2text (1.3.2a-15) ... Setting up libasprintf-dev:amd64 (0.18.1.1-10) ... Setting up libgettextpo-dev:amd64 (0.18.1.1-10) ... Setting up gettext (0.18.1.1-10) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2) ... Setting up debhelper (9.20120909) ... Setting up diffstat (1.55-3) ... Setting up libgirepository-1.0-1 (1.32.1-1) ... Setting up gir1.2-glib-2.0 (1.32.1-1) ... Setting up gir1.2-atk-1.0 (2.4.0-2) ... Setting up gir1.2-freedesktop (1.32.1-1) ... Setting up gir1.2-gdkpixbuf-2.0 (2.26.1-1) ... Setting up gir1.2-pango-1.0 (1.30.0-1) ... Setting up pkg-config (0.26-1) ... Setting up libpcre3-dev:amd64 (1:8.31-2) ... Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13) ... Setting up libglib2.0-dev (2.33.12+really2.32.4-5) ... Setting up libatk1.0-dev (2.4.0-2) ... Setting up libexpat1-dev (2.1.0-1) ... Setting up libfreetype6-dev (2.4.9-1.1) ... Setting up libfontconfig1-dev (2.9.0-7.1) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.23-1) ... Setting up libxau-dev:amd64 (1:1.0.7-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.1-1) ... Setting up x11proto-input-dev (2.2-1) ... Setting up x11proto-kb-dev (1.0.6-2) ... Setting up xtrans-dev (1.2.7-1) ... Setting up libpthread-stubs0:amd64 (0.3-3) ... Setting up libpthread-stubs0-dev:amd64 (0.3-3) ... Setting up libxcb1-dev:amd64 (1.8.1-2) ... Setting up libx11-dev:amd64 (2:1.5.0-1) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev:amd64 (1:0.9.7-1) ... Setting up libpng12-dev (1.2.49-3) ... Setting up libice-dev:amd64 (2:1.0.8-2) ... Setting up libsm-dev:amd64 (2:1.2.1-2) ... Setting up libpixman-1-dev (0.26.0-4) ... Setting up libxcb-render0-dev:amd64 (1.8.1-2) ... Setting up libxcb-shm0-dev:amd64 (1.8.1-2) ... Setting up libcairo2-dev (1.12.2-3) ... Setting up libgdk-pixbuf2.0-dev (2.26.1-1) ... Setting up libxft-dev (2.3.1-1) ... Setting up libpango1.0-dev (1.30.0-1) ... Setting up x11proto-xext-dev (7.2.1-1) ... Setting up libxext-dev:amd64 (2:1.3.1-2) ... Setting up x11proto-xinerama-dev (1.2.1-2) ... Setting up libxinerama-dev:amd64 (2:1.1.2-1) ... Setting up libxi-dev (2:1.6.1-1) ... Setting up x11proto-randr-dev (1.3.2-2) ... Setting up libxrandr-dev (2:1.3.2-2) ... Setting up x11proto-fixes-dev (1:5.0-2) ... Setting up libxfixes-dev (1:5.0-4) ... Setting up libxcursor-dev:amd64 (1:1.1.13-1) ... Setting up x11proto-composite-dev (1:0.4.2-2) ... Setting up libxcomposite-dev (1:0.4.3-2) ... Setting up x11proto-damage-dev (1:1.2.1-2) ... Setting up libxdamage-dev (1:1.1.3-2) ... Setting up libxml2-utils (2.8.0+dfsg1-7+nmu1) ... Setting up libgtk2.0-dev (2.24.10-2) ... Setting up libtinfo-dev:amd64 (5.9-10) ... Setting up libreadline6-dev:amd64 (6.2+dfsg-0.1) ... Setting up libreadline-dev:amd64 (6.2+dfsg-0.1) ... Setting up quilt (0.60-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: fakeroot debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/109 kB of archives. After this operation, 325 kB of additional disk space will be used. Selecting previously unselected package fakeroot. (Reading database ... 17711 files and directories currently installed.) Unpacking fakeroot (from .../fakeroot_1.18.4-2_amd64.deb) ... Processing triggers for man-db ... Setting up fakeroot (1.18.4-2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode I: Copying back the cached apt archive contents I: new cache content libkeyutils1_1.5.5-6_amd64.deb added I: new cache content libgnutls26_2.12.20-5_amd64.deb added I: new cache content libavahi-common-data_0.6.31-2_amd64.deb added I: new cache content libavahi-client3_0.6.31-2_amd64.deb added I: new cache content libcups2_1.5.3-5_amd64.deb added I: new cache content quilt_0.60-8_all.deb added I: new cache content m4_1.4.16-5_amd64.deb added I: new cache content libkrb5-3_1.10.1+dfsg-4+nmu1_amd64.deb added I: new cache content libgssapi-krb5-2_1.10.1+dfsg-4+nmu1_amd64.deb added I: new cache content libgcrypt11_1.5.0-5_amd64.deb added I: new cache content libk5crypto3_1.10.1+dfsg-4+nmu1_amd64.deb added I: new cache content libxml2-utils_2.8.0+dfsg1-7+nmu1_amd64.deb added I: new cache content libpixman-1-0_0.26.0-4_amd64.deb added I: new cache content libavahi-common3_0.6.31-2_amd64.deb added I: new cache content libkrb5support0_1.10.1+dfsg-4+nmu1_amd64.deb added I: new cache content libpixman-1-dev_0.26.0-4_amd64.deb added I: new cache content x11-common_1%3a7.7+2_all.deb added I: Copying source file I: copying [../acedb_4.9.39+dfsg.01-6.dsc] I: copying [../acedb_4.9.39+dfsg.01.orig.tar.gz] I: copying [../acedb_4.9.39+dfsg.01-6.debian.tar.gz] I: Extracting source dpkg-source: warning: extracting unsigned source package (acedb_4.9.39+dfsg.01-6.dsc) dpkg-source: info: extracting acedb in acedb-4.9.39+dfsg.01 dpkg-source: info: unpacking acedb_4.9.39+dfsg.01.orig.tar.gz dpkg-source: info: unpacking acedb_4.9.39+dfsg.01-6.debian.tar.gz dpkg-source: info: applying blxview_gtk_namespace_conflict.patch dpkg-source: info: applying belvu_help.patch dpkg-source: info: applying efetch_help.patch dpkg-source: info: applying dotter_help.patch dpkg-source: info: applying binutils-gold.patch dpkg-source: info: applying no-curses.patch I: Building the package I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" dpkg-buildpackage -us -uc -rfakeroot dpkg-buildpackage: source package acedb dpkg-buildpackage: source version 4.9.39+dfsg.01-6 dpkg-buildpackage: source changed by Andreas Tille dpkg-source --before-build acedb-4.9.39+dfsg.01 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean QUILT_PATCHES=debian/patches \ quilt --quiltrc /dev/null pop -a -R || test $? = 2 Removing patch no-curses.patch Restoring wmake/LINUX_64_DEF Restoring wmake/LINUX_4_DEF Removing patch binutils-gold.patch Restoring wmake/LINUX_64_DEF Restoring wmake/LINUX_4_DEF Removing patch dotter_help.patch Restoring w9/dotterMain.c Removing patch efetch_help.patch Restoring w9/efetch.c Removing patch belvu_help.patch Restoring w9/belvu.c Removing patch blxview_gtk_namespace_conflict.patch Restoring w9/blxview.c No patches applied rm -rf .pc debian/stamp-patched dh_testdir dh_testroot rm -f build-arch-stamp build-indep-stamp configure-stamp rm -fr bin.LINUX_4 #/usr/bin/make clean dh_clean bin dpkg-source -b acedb-4.9.39+dfsg.01 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: applying blxview_gtk_namespace_conflict.patch dpkg-source: info: applying belvu_help.patch dpkg-source: info: applying efetch_help.patch dpkg-source: info: applying dotter_help.patch dpkg-source: info: applying binutils-gold.patch dpkg-source: info: applying no-curses.patch dpkg-source: info: building acedb using existing ./acedb_4.9.39+dfsg.01.orig.tar.gz dpkg-source: info: building acedb in acedb_4.9.39+dfsg.01-6.debian.tar.gz dpkg-source: info: building acedb in acedb_4.9.39+dfsg.01-6.dsc debian/rules build QUILT_PATCHES=debian/patches \ quilt --quiltrc /dev/null push -a || test $? = 2 File series fully applied, ends at patch no-curses.patch touch debian/stamp-patched ln -sf bin.LINUX_4 bin touch configure-stamp # Add here commands to compile the arch part of the package. /usr/bin/make tools other make[1]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01' making makeUserPasswd for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aceversion.o aceversion.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o freesubs.o freesubs.c freesubs.c:55:1: warning: 'ut_copyright_string' defined but not used [-Wunused-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o freeout.o freeout.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o messubs.o messubs.c messubs.c: In function 'uMessCrash': messubs.c:507:5: warning: the address of 'prefix' will always evaluate as 'true' [-Waddress] messubs.c:507:5: warning: the address of 'prefix' will always evaluate as 'true' [-Waddress] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o memsubs.o memsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o arraysub.o arraysub.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o liste.o liste.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o filsubs.o filsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o msort.o msort.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o heap.o heap.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o timesubs.o timesubs.c timesubs.c: In function 'timeStruct': timesubs.c:242:15: warning: unused variable 'save' [-Wunused-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bump.o bump.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o randsubs.o randsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o call.o call.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o menu.o menu.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dict.o dict.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o helpsubs.o helpsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o texthelp.o texthelp.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o utils.o utils.c utils.c: In function 'strcasestr': utils.c:780:3: warning: 'g_strup' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:181) [-Wdeprecated-declarations] utils.c:781:3: warning: 'g_strup' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:181) [-Wdeprecated-declarations] utils.c: In function 'utPrintfSizeOfArgList': utils.c:906:32: warning: variable 'fVal' set but not used [-Wunused-but-set-variable] utils.c:906:19: warning: variable 'iVal' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o vtxt.o vtxt.c vtxt.c: In function 'vtxtRemoveBetween': vtxt.c:147:24: warning: variable 'cs' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o acein.o acein.c acein.c: In function 'aceInPrompt': acein.c:459:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable] acein.c: In function 'aceInOptPrompt': acein.c:504:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable] acein.c: In function 'aceInGetChar': acein.c:2045:8: warning: implicit declaration of function 'add_history' [-Wimplicit-function-declaration] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aceout.o aceout.c aceout.c: In function 'aceTmpCreateDir': aceout.c:648:5: warning: passing argument 1 of 'strnew_dbg' discards 'const' qualifier from pointer target type [enabled by default] In file included from aceout.c:36:0: ../wh/regular.h:159:7: note: expected 'char *' but argument is of type 'const char *' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o strsubs.o strsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o getopt.o getopt.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o getopt1.o getopt1.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o chronoexe.o chronoexe.c ar rlu libfree.a aceversion.o freesubs.o freeout.o messubs.o memsubs.o arraysub.o liste.o filsubs.o msort.o heap.o timesubs.o bump.o randsubs.o call.o menu.o dict.o helpsubs.o texthelp.o utils.o vtxt.o acein.o aceout.o strsubs.o getopt.o getopt1.o chronoexe.o ar: creating libfree.a gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o md5c.o md5c.c ar rlu libmd5.a md5c.o ar: creating libmd5.a gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c makeUserPasswd.c gcc -g -o makeUserPasswd makeUserPasswd.o -L. -lfree -lmd5 -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making acediff for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c acediff.c acediff.c: In function 'printFilePart': acediff.c:103:7: warning: unused variable 'c' [-Wunused-variable] gcc -g -o acediff acediff.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making acediffsorted for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c acediffsorted.c acediffsorted.c: In function 'oneLine_next_Object': acediffsorted.c:150:29: warning: variable 'isDNA' set but not used [-Wunused-but-set-variable] acediffsorted.c: In function 'processDiff': acediffsorted.c:367:18: warning: variable 'obCurrB' set but not used [-Wunused-but-set-variable] gcc -g -o acediffsorted acediffsorted.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making pmapace for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o pmapace2.o pmapace2.c pmapace2.c:91:6: warning: return type of 'main' is not 'int' [-Wmain] pmapace2.c: In function 'main': pmapace2.c:187:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gcc -g -o pmapace pmapace2.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making diskdump for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o diskdump.o diskdump.c diskdump.c:96:6: warning: return type of 'main' is not 'int' [-Wmain] gcc -g -o diskdump diskdump.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making diskfix for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o diskfix.o diskfix.c diskfix.c:55:6: warning: return type of 'main' is not 'int' [-Wmain] gcc -g -o diskfix diskfix.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making metacheck for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o command.o command.c command.c: In function 'aceCommandExecute': command.c:1284:13: warning: variable 'result' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o commandmenu.o commandmenu.c commandmenu.c: In function 'aceCommandCheckForFiles': commandmenu.c:451:9: warning: variable 'dummy' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o session.o session.c session.c: In function 'sessionInit': session.c:795:18: warning: variable 'context' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dbpath.o dbpath.c dbpath.c: In function 'dbPathInit': dbpath.c:43:9: warning: unused variable 'cp' [-Wunused-variable] dbpath.c: In function 'dbPathFilName': dbpath.c:162:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aceutils.o aceutils.c aceutils.c: In function 'simpleCrashRoutine': aceutils.c:94:3: warning: implicit declaration of function 'sessionReleaseWriteAccess' [-Wimplicit-function-declaration] aceutils.c:95:3: warning: implicit declaration of function 'readlockDeleteFile' [-Wimplicit-function-declaration] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o banner.o banner.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o queryexe.o queryexe.c queryexe.c:2088:13: warning: 'cdtDump' defined but not used [-Wunused-function] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o tabledefsubs.o tabledefsubs.c tabledefsubs.c: In function 'spreadCheckConditions': tabledefsubs.c:722:11: warning: variable 'i1' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o tabledefio.o tabledefio.c tabledefio.c: In function 'spreadSaveDefInObj': tabledefio.c:322:8: warning: variable 'buf' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o flag.o flag.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aql.o aql.c flex -l aqlparse.l yacc aqlparse.y mv y.tab.c aqlparse.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aqlparse.o aqlparse.c y.tab.c: In function 'yyparse': y.tab.c:1646:7: warning: implicit declaration of function 'yylex' [-Wimplicit-function-declaration] y.tab.c:2518:7: warning: implicit declaration of function 'yyerror' [-Wimplicit-function-declaration] In file included from aqlparse.y:335:0: aqlparse.l: In function 'yylex': aqlparse.l:175:1: warning: array subscript has type 'char' [-Wchar-subscripts] In file included from aqlparse.y:335:0: lex.yy.c:1535:5: warning: implicit declaration of function 'yywrap' [-Wimplicit-function-declaration] In file included from aqlparse.y:335:0: lex.yy.c:1076:1: warning: label 'find_rule' defined but not used [-Wunused-label] In file included from aqlparse.y:335:0: aqlparse.l: At top level: aqlparse.l:219:6: warning: conflicting types for 'yyerror' [enabled by default] y.tab.c:2518:7: note: previous implicit declaration of 'yyerror' was here In file included from aqlparse.y:335:0: lex.yy.c:1752:17: warning: 'yyunput' defined but not used [-Wunused-function] lex.yy.c:2407:12: warning: 'yy_flex_strlen' defined but not used [-Wunused-function] lex.yy.c:1797:16: warning: 'input' defined but not used [-Wunused-function] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aqlcheck.o aqlcheck.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aqlrun.o aqlrun.c aqlrun.c: In function 'evalExpr': aqlrun.c:3170:18: warning: comparison between 'BOOL' and 'enum ' [-Wenum-compare] aqlrun.c:3170:45: warning: comparison between 'BOOL' and 'enum ' [-Wenum-compare] aqlrun.c:3171:18: warning: comparison between 'BOOL' and 'enum ' [-Wenum-compare] aqlrun.c:3171:46: warning: comparison between 'BOOL' and 'enum ' [-Wenum-compare] aqlrun.c:3174:22: warning: comparison between 'BOOL' and 'enum ' [-Wenum-compare] aqlrun.c:3174:49: warning: comparison between 'BOOL' and 'enum ' [-Wenum-compare] aqlrun.c:3195:26: warning: comparison between 'BOOL' and 'enum ' [-Wenum-compare] aqlrun.c:3199:25: warning: comparison between 'BOOL' and 'enum ' [-Wenum-compare] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aqlerror.o aqlerror.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aqldebug.o aqldebug.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o keysetdump.o keysetdump.c keysetdump.c: In function 'keySetParse': keysetdump.c:281:19: warning: variable 'result' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o lexsubs4.o lexsubs4.c lexsubs4.c: In function 'lexiread': lexsubs4.c:528:26: warning: variable 'lx2' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o lexalpha.o lexalpha.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o disknew.o disknew.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o blocksub.o blocksub.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o objcache.o objcache.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o idacedb.o idacedb.c idacedb.c: In function 'idaAddName': idacedb.c:317:7: warning: the address of 'name' will always evaluate as 'true' [-Waddress] idacedb.c:317:16: warning: the address of 'name' will always evaluate as 'true' [-Waddress] idacedb.c: In function 'idControl': idacedb.c:973:13: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o idcurate.o idcurate.c idcurate.c: In function 'idError': idcurate.c:51:1: warning: implicit declaration of function 'idaError' [-Wimplicit-function-declaration] idcurate.c: In function 'idKill': idcurate.c:60:1: warning: implicit declaration of function 'idaKill' [-Wimplicit-function-declaration] idcurate.c: In function 'idResurrect': idcurate.c:63:1: warning: implicit declaration of function 'idaResurrect' [-Wimplicit-function-declaration] idcurate.c: In function 'idMerge': idcurate.c:66:1: warning: implicit declaration of function 'idaMerge' [-Wimplicit-function-declaration] idcurate.c: In function 'idAddName': idcurate.c:72:1: warning: implicit declaration of function 'idaAddName' [-Wimplicit-function-declaration] idcurate.c: In function 'idRemoveName': idcurate.c:75:1: warning: implicit declaration of function 'idaRemoveName' [-Wimplicit-function-declaration] idcurate.c: In function 'idVersion': idcurate.c:96:1: warning: implicit declaration of function 'idaVersion' [-Wimplicit-function-declaration] idcurate.c: In function 'idLive': idcurate.c:99:1: warning: implicit declaration of function 'idaLive' [-Wimplicit-function-declaration] idcurate.c: In function 'idExists': idcurate.c:108:1: warning: implicit declaration of function 'idaExists' [-Wimplicit-function-declaration] idcurate.c: In function 'idCreateDomain': idcurate.c:117:1: warning: implicit declaration of function 'idaCreateDomain' [-Wimplicit-function-declaration] idcurate.c: In function 'idSetTemplate': idcurate.c:120:1: warning: implicit declaration of function 'idaSetTemplate' [-Wimplicit-function-declaration] idcurate.c: In function 'idAddNameType': idcurate.c:124:1: warning: implicit declaration of function 'idaAddNameType' [-Wimplicit-function-declaration] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bs2block.o bs2block.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o adisk.o adisk.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o acache.o acache.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bsubs.o bsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bstree.o bstree.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bstools.o bstools.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o keyset.o keyset.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bsdumps.o bsdumps.c bsdumps.c: In function 'bsAceDumpCell': bsdumps.c:202:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o nicedump.o nicedump.c nicedump.c: In function 'niceBSXML': nicedump.c:640:6: warning: variable 'bs_down' set but not used [-Wunused-but-set-variable] nicedump.c: In function 'niceTextXMLSchema': nicedump.c:956:14: warning: unused variable 'my_name' [-Wunused-variable] nicedump.c:895:9: warning: variable 'debug' set but not used [-Wunused-but-set-variable] nicedump.c: At top level: nicedump.c:103:13: warning: 'debug' defined but not used [-Wunused-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o asubs.o asubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bssubs.o bssubs.c bssubs.c: In function 'bsAddData': bssubs.c:1440:13: warning: null argument where non-null required (argument 1) [-Wnonnull] bssubs.c:1440:13: warning: null argument where non-null required (argument 1) [-Wnonnull] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o check.o check.c check.c: In function 'checkData': check.c:94:9: warning: variable 'x' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dnasubs.o dnasubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dnacode.o dnacode.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o peptide.o peptide.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o matchtable.o matchtable.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o basepad.o basepad.c basepad.c:152:13: warning: 'depadSequence' defined but not used [-Wunused-function] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o smap.o smap.c smap.c: In function 'sMapReMap': smap.c:927:9: warning: unused variable 'reverse_local_map' [-Wunused-variable] smap.c: At top level: smap.c:2466:19: warning: 'clipLocalMap' defined but not used [-Wunused-function] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o class.o class.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o sysclass.o sysclass.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o tags.o tags.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o model.o model.c model.c: In function 'getNewModels': model.c:733:3: warning: implicit declaration of function 'lexAlphaClassList' [-Wimplicit-function-declaration] model.c:600:18: warning: variable 'oldKey' set but not used [-Wunused-but-set-variable] model.c: At top level: model.c:488:13: warning: 'treeCompare' defined but not used [-Wunused-function] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o longtext.o longtext.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o quovadis.o quovadis.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o picksubs.o picksubs.c picksubs.c: In function 'pickGetClassProperties': picksubs.c:297:10: warning: type defaults to 'int' in declaration of 'displayOK' [-Wimplicit-int] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o alignment.o alignment.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o logsubs.o logsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o sigsubs.o sigsubs.c sigsubs.c: In function 'getSignalText': sigsubs.c:486:28: warning: initialization from incompatible pointer type [enabled by default] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o prefsubs.o prefsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o status.o status.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bindex.o bindex.c bindex.c: In function 'bIndexNewModels': bindex.c:743:16: warning: variable 'kk' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o acelib.o acelib.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o table.o table.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o apputils.o apputils.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o acinside.o acinside.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o actable.o actable.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -DNON_GRAPHIC -c parse.c -o parse.ng.o gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -DNON_GRAPHIC -c dump.c -o dump.ng.o dump.c: In function 'dumpKey2': dump.c:253:17: warning: implicit declaration of function 'dnaDumpKeyCstyle' [-Wimplicit-function-declaration] dump.c:255:18: warning: implicit declaration of function 'peptideDumpKeyCstyle' [-Wimplicit-function-declaration] dump.c: In function 'dumpDoReadAll': dump.c:699:8: warning: variable 'dump_stats' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -DNON_GRAPHIC -c biblio.c -o biblio.ng.o ar rlu libace.a command.o commandmenu.o session.o dbpath.o aceutils.o banner.o queryexe.o tabledefsubs.o tabledefio.o flag.o aql.o aqlparse.o aqlcheck.o aqlrun.o aqlerror.o aqldebug.o keysetdump.o lexsubs4.o lexalpha.o disknew.o blocksub.o objcache.o idacedb.o idcurate.o bs2block.o adisk.o acache.o bsubs.o bstree.o bstools.o keyset.o bsdumps.o nicedump.o asubs.o bssubs.o check.o dnasubs.o dnacode.o peptide.o matchtable.o basepad.o smap.o class.o sysclass.o tags.o model.o longtext.o quovadis.o picksubs.o alignment.o logsubs.o sigsubs.o prefsubs.o status.o bindex.o acelib.o table.o apputils.o acinside.o actable.o parse.ng.o dump.ng.o biblio.ng.o ar: creating libace.a gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o metadata.o metadata.c metadata.c: In function 'main': metadata.c:190:5: warning: implicit declaration of function 'aceInit' [-Wimplicit-function-declaration] gcc -g -o metacheck metadata.o -L. -lace -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 -lfl make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making homonym for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o homonym.o homonym.c homonym.c: In function 'readRules': homonym.c:128:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses] homonym.c: At top level: homonym.c:165:6: warning: return type of 'main' is not 'int' [-Wmain] gcc -g -o homonym homonym.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making tagcount for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c tagcount.c gcc -g -o tagcount tagcount.o -L. -lace -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 -lfl make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making blixem for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphgtk.o graphgtk.c graphgtk.c: In function 'installRemoteAtoms': graphgtk.c:1170:9: warning: pointer targets in passing argument 6 of 'gdk_property_change' differ in signedness [-Wpointer-sign] In file included from /usr/include/gtk-2.0/gdk/gdk.h:50:0, from /usr/include/gtk-2.0/gtk/gtk.h:32, from graphgtk.c:37: /usr/include/gtk-2.0/gdk/gdkproperty.h:60:10: note: expected 'const guchar *' but argument is of type 'char *' graphgtk.c:1178:9: warning: pointer targets in passing argument 6 of 'gdk_property_change' differ in signedness [-Wpointer-sign] In file included from /usr/include/gtk-2.0/gdk/gdk.h:50:0, from /usr/include/gtk-2.0/gtk/gtk.h:32, from graphgtk.c:37: /usr/include/gtk-2.0/gdk/gdkproperty.h:60:10: note: expected 'const guchar *' but argument is of type 'char *' graphgtk.c: In function 'keyboardEvent': graphgtk.c:1183:8: warning: unused variable 'result' [-Wunused-variable] graphgtk.c: In function 'changeCursor': graphgtk.c:1438:52: warning: pointer targets in passing argument 2 of 'gdk_bitmap_create_from_data' differ in signedness [-Wpointer-sign] In file included from /usr/include/gtk-2.0/gdk/gdk.h:49:0, from /usr/include/gtk-2.0/gtk/gtk.h:32, from graphgtk.c:37: /usr/include/gtk-2.0/gdk/gdkpixmap.h:74:12: note: expected 'const gchar *' but argument is of type 'unsigned char *' graphgtk.c: In function 'selection_received': graphgtk.c:1705:5: warning: pointer targets in passing argument 2 of 'graphCBPaste' differ in signedness [-Wpointer-sign] In file included from graphgtk.c:54:0: ../w2/graphdev.h:348:6: note: expected 'char *' but argument is of type 'guchar *' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphgdk.o graphgdk.c graphgdk.c: In function 'graphGtkSetGreyMap': graphgdk.c:378:10: warning: type defaults to 'int' in declaration of 'usingPrivate' [-Wimplicit-int] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphgdkremote.o graphgdkremote.c graphgdkremote.c: In function 'devGtkWebBrowser': graphgdkremote.c:280:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] In file included from graphgdkremote.c:106:0: graphgdkremote.c: At top level: ../w2/vroot.h:65:1: warning: 'VirtualRootWindowOfScreen' defined but not used [-Wunused-function] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gexhelp.o gexhelp.c gexhelp.c:88:3: warning: initialization from incompatible pointer type [enabled by default] gexhelp.c:88:3: warning: (near initialization for 'helpViewMenu[0].f') [enabled by default] gexhelp.c:89:3: warning: initialization from incompatible pointer type [enabled by default] gexhelp.c:89:3: warning: (near initialization for 'helpViewMenu[1].f') [enabled by default] gexhelp.c: In function 'gexHtmlViewer': gexhelp.c:253:2: warning: implicit declaration of function 'graphMenuBar' [-Wimplicit-function-declaration] gexhelp.c: In function 'printSection': gexhelp.c:592:5: warning: variable 'MODE_HEADER' set but not used [-Wunused-but-set-variable] gexhelp.c:587:22: warning: variable 'hrefCp' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gexramptool.o gexramptool.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gex.o gex.c gex.c: In function 'ButtonPressCallback': gex.c:1870:19: warning: variable 'accel_group' set but not used [-Wunused-but-set-variable] gex.c: At top level: gex.c:872:13: warning: 'ace_file_selection_dir_button' defined but not used [-Wunused-function] ar rlu libgex.a graphgtk.o graphgdk.o graphgdkremote.o gexhelp.o gexramptool.o gex.o ar: creating libgex.a gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphcon.o graphcon.c graphcon.c:94:1: warning: 'ut_copyright_string' defined but not used [-Wunused-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphsub.o graphsub.c graphsub.c: In function 'drawBox': graphsub.c:354:17: warning: unused variable 'uintp' [-Wunused-variable] graphsub.c:289:18: warning: variable 'utext' set but not used [-Wunused-but-set-variable] graphsub.c: In function 'graphBoxShift': graphsub.c:2233:20: warning: unused variable 'uintp' [-Wunused-variable] graphsub.c:2280:10: warning: variable 'gim' set but not used [-Wunused-but-set-variable] graphsub.c:2193:18: warning: variable 'utext' set but not used [-Wunused-but-set-variable] graphsub.c:2192:9: warning: variable 'text' set but not used [-Wunused-but-set-variable] graphsub.c:2191:9: warning: variable 't' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphps.o graphps.c graphps.c: In function 'psDrawBox': graphps.c:399:5: warning: operation on 'ps->graph->stack->pos' may be undefined [-Wsequence-point] graphps.c:406:9: warning: operation on 'ps->graph->stack->pos' may be undefined [-Wsequence-point] graphps.c:609:14: warning: variable 'gim' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphgdi.o graphgdi.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphselect.o graphselect.c graphselect.c:49:13: warning: 'popScrolledDraw' declared 'static' but never defined [-Wunused-function] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphascii.o graphascii.c graphascii.c: In function 'graphASCII': graphascii.c:255:7: warning: variable 'pages' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphprint.o graphprint.c graphprint.c: In function 'pdInit': graphprint.c:1164:3: warning: 'getwd' is deprecated (declared at /usr/include/unistd.h:522) [-Wdeprecated-declarations] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o filquery.o filquery.c filquery.c: In function 'localQueryOpen': filquery.c:516:11: warning: the address of 'path' will always evaluate as 'true' [-Waddress] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphgif.o graphgif.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o colcontrol.o colcontrol.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o viewedit.o viewedit.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o chronodisp.o chronodisp.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphcolour.o graphcolour.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphAcedbInterface.o graphAcedbInterface.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphremote.o graphremote.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphmesglist.o graphmesglist.c graphmesglist.c:82:13: warning: 'mesgDestroy' declared 'static' but never defined [-Wunused-function] ar rlu libgraph.a graphcon.o graphsub.o graphps.o graphgdi.o graphselect.o graphascii.o graphprint.o filquery.o graphgif.o colcontrol.o viewedit.o chronodisp.o graphcolour.o graphAcedbInterface.o graphremote.o graphmesglist.o ar: creating libgraph.a gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o libgd.o libgd.c libgd.c: In function 'gdImageCreateFromGif': libgd.c:1640:12: warning: variable 'AspectRatio' set but not used [-Wunused-but-set-variable] libgd.c:1639:12: warning: variable 'Background' set but not used [-Wunused-but-set-variable] libgd.c:1638:12: warning: variable 'ColorResolution' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gdfont6x9.o gdfont6x9.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gdfont8x13.o gdfont8x13.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gdfont8x13bold.o gdfont8x13bold.c ar rlu libgd.a libgd.o gdfont6x9.o gdfont8x13.o gdfont8x13bold.o ar: creating libgd.a gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o blixem.o blxview.c blxview.c: In function 'gotoMatch': blxview.c:600:16: warning: variable 'closest' set but not used [-Wunused-but-set-variable] blxview.c: In function 'makeButtonBar': blxview.c:3535:16: warning: variable 'item' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o blxmain.o blxmain.c blxmain.c:43:1: warning: 'ut_copyright_string' defined but not used [-Wunused-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o blxparser.o blxparser.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o translate.o translate.c In file included from translate.c:34:0: ../wh/iupac.h:36:3: warning: missing braces around initializer [-Wmissing-braces] ../wh/iupac.h:36:3: warning: (near initialization for 'PAM120[0]') [-Wmissing-braces] ../wh/iupac.h:129:3: warning: missing braces around initializer [-Wmissing-braces] ../wh/iupac.h:129:3: warning: (near initialization for 'iupac[0]') [-Wmissing-braces] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dotter.o dotter.c dotter.c: In function 'savePlot': dotter.c:574:2: warning: variable 'batch' set but not used [-Wunused-but-set-variable] dotter.c: In function 'drawBlastHSPs': dotter.c:1648:2: warning: variable 'strand' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dotterKarlin.o dotterKarlin.c dotterKarlin.c: In function 'winsizeFromlambdak': dotterKarlin.c:378:2: warning: array subscript has type 'char' [-Wchar-subscripts] dotterKarlin.c:380:6: warning: array subscript has type 'char' [-Wchar-subscripts] dotterKarlin.c:387:2: warning: array subscript has type 'char' [-Wchar-subscripts] dotterKarlin.c:388:6: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -g -o blixem blixem.o blxmain.o blxparser.o dotter.o dotterKarlin.o \ translate.o -L. -lgex -lgraph -lgd -lfree `../w3rdparty/acedb-config glib-2.0 gtk+-2.0` -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making blixelect for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o blxselect.o blxselect.c gcc -g -o blixelect blxselect.o blxparser.o blixem.o dotter.o dotterKarlin.o \ translate.o -L. -lgex -lgraph -lgd -lfree `../w3rdparty/acedb-config glib-2.0 gtk+-2.0` -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making dotter for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dotterMain.o dotterMain.c dotterMain.c: In function 'stringUnprotect': dotterMain.c:87:7: warning: assignment makes integer from pointer without a cast [enabled by default] gcc -g -o dotter dotter.o dotterKarlin.o dotterMain.o \ translate.o blxparser.o blixem.o -L. -lgex -lgraph -lgd -lfree `../w3rdparty/acedb-config glib-2.0 gtk+-2.0` -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making belvu for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -O2 -g3 -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o belvu.o belvu.c belvu.c:310:3: warning: missing braces around initializer [-Wmissing-braces] belvu.c:310:3: warning: (near initialization for 'BLOSUM62[0]') [-Wmissing-braces] belvu.c:337:0: warning: "NA" redefined [enabled by default] In file included from belvu.c:239:0: ../wh/dotter_.h:41:0: note: this is the location of the previous definition belvu.c:767:5: warning: missing braces around initializer [-Wmissing-braces] belvu.c:767:5: warning: (near initialization for 'mainMenu[0]') [-Wmissing-braces] belvu.c:791:5: warning: missing braces around initializer [-Wmissing-braces] belvu.c:791:5: warning: (near initialization for 'treeMenu[0]') [-Wmissing-braces] belvu.c:801:5: warning: missing braces around initializer [-Wmissing-braces] belvu.c:801:5: warning: (near initialization for 'conservationMenu[0]') [-Wmissing-braces] belvu.c:811:5: warning: missing braces around initializer [-Wmissing-braces] belvu.c:811:5: warning: (near initialization for 'wrapMenu[0]') [-Wmissing-braces] belvu.c:834:5: warning: missing braces around initializer [-Wmissing-braces] belvu.c:834:5: warning: (near initialization for 'colorMENU[0]') [-Wmissing-braces] belvu.c:859:5: warning: missing braces around initializer [-Wmissing-braces] belvu.c:859:5: warning: (near initialization for 'colorEditingMENU[0]') [-Wmissing-braces] belvu.c:867:5: warning: missing braces around initializer [-Wmissing-braces] belvu.c:867:5: warning: (near initialization for 'editMENU[0]') [-Wmissing-braces] belvu.c:893:5: warning: missing braces around initializer [-Wmissing-braces] belvu.c:893:5: warning: (near initialization for 'showColorMENU[0]') [-Wmissing-braces] belvu.c:901:5: warning: missing braces around initializer [-Wmissing-braces] belvu.c:901:5: warning: (near initialization for 'sortMENU[0]') [-Wmissing-braces] belvu.c:917:5: warning: missing braces around initializer [-Wmissing-braces] belvu.c:917:5: warning: (near initialization for 'saveMENU[0]') [-Wmissing-braces] belvu.c:929:5: warning: missing braces around initializer [-Wmissing-braces] belvu.c:929:5: warning: (near initialization for 'treeGUIMENU[0]') [-Wmissing-braces] belvu.c:940:5: warning: missing braces around initializer [-Wmissing-braces] belvu.c:940:5: warning: (near initialization for 'treeDistMENU[0]') [-Wmissing-braces] belvu.c: In function 'reInsertMarkupLines': belvu.c:1356:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] belvu.c: In function 'countResidueFreqs': belvu.c:1695:6: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c:1675:17: warning: unused variable 'max' [-Wunused-variable] belvu.c: In function 'setConservColors': belvu.c:1798:4: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c: In function 'findResidueBGcolor': belvu.c:1832:2: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c:1834:2: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c:1836:2: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c: In function 'belvuRedraw': belvu.c:1933:30: warning: unused variable 'c' [-Wunused-variable] belvu.c:1933:19: warning: unused variable 'word1end' [-Wunused-variable] belvu.c: In function 'outputProbs': belvu.c:2339:6: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c:2340:3: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c:2298:11: warning: unused variable 'f' [-Wunused-variable] belvu.c: In function 'writeMul': belvu.c:2424:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] belvu.c: In function 'conservationPlot': belvu.c:2828:55: warning: unused variable 'range' [-Wunused-variable] belvu.c:2828:20: warning: unused variable 'scaley' [-Wunused-variable] belvu.c:2828:12: warning: unused variable 'scalex' [-Wunused-variable] belvu.c: In function 'readMul': belvu.c:4617:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] belvu.c:4650:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] belvu.c:4666:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] belvu.c: In function 'main': belvu.c:4912:9: warning: unused variable 'dy' [-Wunused-variable] belvu.c:4912:5: warning: unused variable 'dx' [-Wunused-variable] belvu.c:4908:3: warning: unused variable 'cp' [-Wunused-variable] belvu.c:4903:2: warning: unused variable 'command' [-Wunused-variable] belvu.c: In function 'showColorCodesRedraw': belvu.c:5539:6: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c:5540:8: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c: In function 'readColorCodes': belvu.c:5637:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] belvu.c:5648:6: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c:5650:3: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c:5652:3: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c: In function 'saveColorCodes': belvu.c:5680:2: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c: In function 'setColorCodes': belvu.c:5922:2: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c: In function 'externalCommand': belvu.c:5950:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses] belvu.c:5971:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] belvu.c: In function 'wrapAlignmentWindow': belvu.c:6003:3: warning: unused variable 'cp' [-Wunused-variable] belvu.c: In function 'score': belvu.c:6216:2: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c:6216:2: warning: array subscript has type 'char' [-Wchar-subscripts] belvu.c: In function 'rmGappySeqsPrompt': belvu.c:6347:37: warning: unused variable 'maxid' [-Wunused-variable] belvu.c:6347:33: warning: unused variable 'id' [-Wunused-variable] belvu.c: In function 'markup': belvu.c:6632:9: warning: unused variable 'i' [-Wunused-variable] belvu.c: In function 'hide': belvu.c:6665:9: warning: unused variable 'i' [-Wunused-variable] belvu.c: In function 'rmPicked': belvu.c:6690:9: warning: unused variable 'i' [-Wunused-variable] belvu.c: In function 'rmColumn': belvu.c:6733:3: warning: unused variable 'cp' [-Wunused-variable] belvu.c: In function 'rmColumnCutoff': belvu.c:6876:2: warning: unused variable 'started' [-Wunused-variable] belvu.c: In function 'readMatch': belvu.c:7131:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] belvu.c:7159:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] belvu.c:7165:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] belvu.c:7191:7: warning: "/*" within comment [-Wcomment] belvu.c:7208:7: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat] belvu.c: In function 'findCommand': belvu.c:7276:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] belvu.c: In function 'treeBalanceTreeRecurse': belvu.c:7351:15: warning: unused variable 'newtree' [-Wunused-variable] belvu.c: At top level: belvu.c:432:14: warning: 'colorNamesOld' defined but not used [-Wunused-variable] belvu.c:531:17: warning: 'AlignXend' defined but not used [-Wunused-variable] belvu.c:532:17: warning: 'AlignYend' defined but not used [-Wunused-variable] belvu.c:579:17: warning: 'treeSampleOn' defined but not used [-Wunused-variable] belvu.c:5886:13: warning: 'setColorCodes' defined but not used [-Wunused-function] belvu.c:2559:13: warning: 'treeKIMURAselect' defined but not used [-Wunused-function] belvu.c:7241:13: warning: 'readMatchPrompt' defined but not used [-Wunused-function] belvu.c:1482:14: warning: 'aln2str' defined but not used [-Wunused-function] belvu.c:3044:13: warning: 'setTreeScale' defined but not used [-Wunused-function] belvu.c:7348:13: warning: 'treeBalanceTreeRecurse' defined but not used [-Wunused-function] belvu.c:7403:13: warning: 'treeCalcBalanceOld' defined but not used [-Wunused-function] belvu.c: In function 'main': belvu.c:5332:1: warning: control reaches end of non-void function [-Wreturn-type] belvu.c: In function 'writeMSF': belvu.c:4271:1: warning: control reaches end of non-void function [-Wreturn-type] belvu.c: In function 'treeFindOrthologs': belvu.c:3653:27: warning: 'org1' may be used uninitialized in this function [-Wuninitialized] belvu.c:3653:27: warning: 'org2' may be used uninitialized in this function [-Wuninitialized] belvu.c: In function 'treeMake': belvu.c:3934:33: warning: 'newnode' may be used uninitialized in this function [-Wmaybe-uninitialized] belvu.c:3938:54: warning: 'maxid' may be used uninitialized in this function [-Wmaybe-uninitialized] belvu.c: In function 'readMatch': belvu.c:7235:5: warning: 'rawseq' may be used uninitialized in this function [-Wmaybe-uninitialized] belvu.c:7179:18: warning: 'SegList' may be used uninitialized in this function [-Wmaybe-uninitialized] belvu.c: In function 'readMul': belvu.c:4556:28: warning: 'ch' may be used uninitialized in this function [-Wmaybe-uninitialized] belvu.c:4419:12: warning: 'seqp' may be used uninitialized in this function [-Wmaybe-uninitialized] belvu.c:4393:24: note: 'seqp' was declared here gcc -g -o belvu belvu.o \ -L. -lgex -lgraph -lgd -lfree `../w3rdparty/acedb-config glib-2.0 gtk+-2.0` -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making jade2ace for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' rpcgen -b -I -K -1 rpcace.x gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -c aceclientlib.c aceclientlib.c: In function 'wakeUp': aceclientlib.c:59:14: warning: variable 'sig' set but not used [-Wunused-but-set-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o rpcace_clnt.o rpcace_clnt.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o rpcace_xdr.o rpcace_xdr.c rpcace_xdr.c: In function 'xdr_ace_reponse': rpcace_xdr.c:94:20: warning: unused variable 'buf' [-Wunused-variable] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c jade2ace.c gcc -g -o jade2ace jade2ace.o aceclientlib.o rpcace_clnt.o rpcace_xdr.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 chmod 755 jade2ace \rm -f netclient ln -s jade2ace netclient make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making efetch for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -DMIXDB efetch.c efetch.c: In function 'swissprot': efetch.c:46:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:46:5: warning: implicit declaration of function 'strcpy' [-Wimplicit-function-declaration] efetch.c:46:32: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] efetch.c: In function 'pir': efetch.c:52:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:52:33: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] efetch.c: In function 'wormpep': efetch.c:58:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:58:34: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] efetch.c: In function 'embl': efetch.c:65:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:65:34: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] efetch.c: In function 'genbank': efetch.c:71:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:71:32: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] efetch.c: In function 'prodom': efetch.c:77:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:77:36: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] efetch.c: In function 'prosite': efetch.c:83:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:83:37: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] efetch.c: At top level: efetch.c:89:6: warning: return type of 'main' is not 'int' [-Wmain] efetch.c: In function 'main': efetch.c:191:2: warning: implicit declaration of function 'strncmp' [-Wimplicit-function-declaration] efetch.c:192:3: warning: implicit declaration of function 'strlen' [-Wimplicit-function-declaration] efetch.c:192:23: warning: incompatible implicit declaration of built-in function 'strlen' [enabled by default] efetch.c:196:3: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] efetch.c:197:3: warning: implicit declaration of function 'strncat' [-Wimplicit-function-declaration] efetch.c:197:3: warning: incompatible implicit declaration of built-in function 'strncat' [enabled by default] efetch.c:198:3: warning: implicit declaration of function 'strcat' [-Wimplicit-function-declaration] efetch.c:198:3: warning: incompatible implicit declaration of built-in function 'strcat' [enabled by default] efetch.c:205:3: warning: implicit declaration of function 'getopt' [-Wimplicit-function-declaration] efetch.c:209:7: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] efetch.c:231:27: warning: incompatible implicit declaration of built-in function 'strlen' [enabled by default] efetch.c:236:7: warning: incompatible implicit declaration of built-in function 'strncat' [enabled by default] efetch.c:237:7: warning: incompatible implicit declaration of built-in function 'strcat' [enabled by default] efetch.c:284:8: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] efetch.c:286:15: warning: incompatible implicit declaration of built-in function 'strlen' [enabled by default] efetch.c:286:3: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] efetch.c:287:3: warning: implicit declaration of function 'strchr' [-Wimplicit-function-declaration] efetch.c:287:24: warning: incompatible implicit declaration of built-in function 'strchr' [enabled by default] efetch.c:287:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:288:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:313:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:316:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:339:3: warning: implicit declaration of function 'strcmp' [-Wimplicit-function-declaration] efetch.c:355:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:552:4: warning: implicit declaration of function 'strstr' [-Wimplicit-function-declaration] efetch.c:552:59: warning: incompatible implicit declaration of built-in function 'strstr' [enabled by default] efetch.c:553:8: warning: suggest parentheses around assignment used as truth value [-Wparentheses] efetch.c:555:8: warning: incompatible implicit declaration of built-in function 'strcat' [enabled by default] efetch.c:282:12: warning: 'usage' may be used uninitialized in this function [-Wuninitialized] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dbidx.o dbidx.c dbidx.c: In function 'isseq': dbidx.c:109:5: warning: implicit declaration of function 'isalpha' [-Wimplicit-function-declaration] dbidx.c: In function 'printheader': dbidx.c:150:3: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat] dbidx.c:151:3: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat] dbidx.c: In function 'printActrg': dbidx.c:162:3: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat] dbidx.c:163:3: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat] dbidx.c: In function 'readEntrynam': dbidx.c:198:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] dbidx.c: In function 'printEntrynam': dbidx.c:238:3: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat] dbidx.c:239:3: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat] dbidx.c: In function 'printPIRseq': dbidx.c:330:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] dbidx.c:353:7: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] dbidx.c: In function 'printGBseq': dbidx.c:398:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses] dbidx.c: In function 'printEMBLseq': dbidx.c:448:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] dbidx.c: In function 'getname': dbidx.c:586:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses] dbidx.c: In function 'getdbfile': dbidx.c:627:3: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] dbidx.c:631:3: warning: implicit declaration of function 'tolower' [-Wimplicit-function-declaration] dbidx.c: In function 'bin_search': dbidx.c:662:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] dbidx.c:667:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses] dbidx.c:669:3: warning: format '%d' expects argument of type 'int', but argument 4 has type 'size_t' [-Wformat] dbidx.c:686:6: warning: format '%d' expects argument of type 'int', but argument 4 has type 'size_t' [-Wformat] dbidx.c:655:62: warning: variable 'matchlen' set but not used [-Wunused-but-set-variable] dbidx.c: In function 'getAcentry_rec_num': dbidx.c:747:9: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat] dbidx.c:747:9: warning: spurious trailing '%' in format [-Wformat] gcc -g -o efetch efetch.o dbidx.o make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making gnbk for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' rpcgen -b -I -K -1 rpcgnbk.x gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c gnbkserver.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gnbk.o gnbk.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o rpcgnbk_sp.o rpcgnbk_sp.c In file included from rpcgnbk_sp.c:52:0: rpcgnbk_svc.c: In function 'my_run_rpc': rpcgnbk_svc.c:90:30: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] In file included from /usr/include/netinet/in.h:25:0, from /usr/include/rpc/types.h:91, from /usr/include/rpc/rpc.h:38, from rpcgnbk.h:9, from rpcgnbk_svc.c:6, from rpcgnbk_sp.c:52: /usr/include/x86_64-linux-gnu/sys/socket.h:119:12: note: expected 'socklen_t * __restrict__' but argument is of type 'int *' In file included from rpcgnbk_sp.c:52:0: rpcgnbk_svc.c:96:5: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign] In file included from /usr/include/netinet/in.h:25:0, from /usr/include/rpc/types.h:91, from /usr/include/rpc/rpc.h:38, from rpcgnbk.h:9, from rpcgnbk_svc.c:6, from rpcgnbk_sp.c:52: /usr/include/x86_64-linux-gnu/sys/socket.h:190:12: note: expected 'socklen_t * __restrict__' but argument is of type 'int *' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o rpcgnbk_xdr.o rpcgnbk_xdr.c rpcgnbk_xdr.c: In function 'xdr_gnbk_data': rpcgnbk_xdr.c:11:20: warning: unused variable 'buf' [-Wunused-variable] rpcgnbk_xdr.c: In function 'xdr_gnbk_reponse': rpcgnbk_xdr.c:23:20: warning: unused variable 'buf' [-Wunused-variable] gcc -g -o gnbk gnbk.o gnbkserver.o rpcgnbk_sp.o rpcgnbk_xdr.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making gnbkclient for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gnbkclient.o gnbkclient.c gnbkclient.c:97:6: warning: return type of 'main' is not 'int' [-Wmain] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gnbkclientlib.o gnbkclientlib.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o rpcgnbk_clnt.o rpcgnbk_clnt.c gcc -g -o gnbkclient gnbkclient.o gnbkclientlib.o rpcgnbk_clnt.o rpcgnbk_xdr.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making genefeatures for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c gfcode.c gfcode.c: In function 'lettsToNums': gfcode.c:188:5: warning: implicit declaration of function 'malloc' [-Wimplicit-function-declaration] gfcode.c:188:29: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] gfcode.c: In function 'countsToFreqs': gfcode.c:210:3: warning: implicit declaration of function 'strcmp' [-Wimplicit-function-declaration] gfcode.c: In function 'readTableFile': gfcode.c:486:7: warning: implicit declaration of function 'strcpy' [-Wimplicit-function-declaration] gfcode.c:486:7: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] gfcode.c:499:7: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration] gfcode.c:499:7: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default] gfcode.c:516:4: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default] gfcode.c: In function 'initTable': gfcode.c:538:22: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] gfcode.c:541:3: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] gfcode.c: In function 'expandTable': gfcode.c:570:29: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] gfcode.c: In function 'allocIntMat': gfcode.c:578:20: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] gfcode.c: In function 'allocFloatMat': gfcode.c:591:22: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] gfcode.c: In function 'makeConvTable': gfcode.c:605:22: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] gfcode.c: In function 'aceFeatures': gfcode.c:659:25: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] gfcode.c:664:6: warning: implicit declaration of function 'strncmp' [-Wimplicit-function-declaration] gfcode.c:671:5: warning: implicit declaration of function 'free' [-Wimplicit-function-declaration] gfcode.c:671:5: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] gfcode.c:643:7: warning: variable 'nSites' set but not used [-Wunused-but-set-variable] gfcode.c: In function 'allocGap': gfcode.c:748:40: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] gfcode.c: In function 'aceMaxSegs': gfcode.c:781:19: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] gfcode.c:821:3: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] gfcode.c: In function 'sequenceAllocate': gfcode.c:837:21: warning: incompatible implicit declaration of built-in function 'malloc' [enabled by default] gfcode.c:842:3: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] gfcode.c: In function 'sequenceDestroy': gfcode.c:851:3: warning: incompatible implicit declaration of built-in function 'free' [enabled by default] gfcode.c: In function 'createSequences': gfcode.c:869:3: warning: implicit declaration of function 'strlen' [-Wimplicit-function-declaration] gfcode.c:869:12: warning: incompatible implicit declaration of built-in function 'strlen' [enabled by default] gfcode.c: In function 'geneFinderInit': gfcode.c:1086:7: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] gfcode.c:1017:9: warning: unused variable 'cp' [-Wunused-variable] gfcode.c: In function 'usage': gfcode.c:1106:3: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default] gfcode.c: In function 'main': gfcode.c:1168:7: warning: incompatible implicit declaration of built-in function 'exit' [enabled by default] gfcode.c:1177:7: warning: implicit declaration of function 'atof' [-Wimplicit-function-declaration] gfcode.c:1214:5: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char **' [-Wformat] gfcode.c:1220:5: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char **' [-Wformat] gfcode.c: At top level: gfcode.c:79:14: warning: 'localGf' defined but not used [-Wunused-variable] gfcode.c: In function 'main': gfcode.c:1232:1: warning: control reaches end of non-void function [-Wreturn-type] gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c readseq.c readseq.c: In function 'add': readseq.c:48:4: warning: implicit declaration of function 'memcpy' [-Wimplicit-function-declaration] readseq.c:48:4: warning: incompatible implicit declaration of built-in function 'memcpy' [enabled by default] readseq.c: In function 'readSequence': readseq.c:121:7: warning: array subscript has type 'char' [-Wchar-subscripts] readseq.c:130:7: warning: array subscript has type 'char' [-Wchar-subscripts] readseq.c:131:2: warning: array subscript has type 'char' [-Wchar-subscripts] readseq.c: In function 'writeSequence': readseq.c:190:7: warning: array subscript has type 'char' [-Wchar-subscripts] readseq.c:191:2: warning: array subscript has type 'char' [-Wchar-subscripts] readseq.c: In function 'readMatrix': readseq.c:215:5: warning: implicit declaration of function 'strcpy' [-Wimplicit-function-declaration] readseq.c:215:5: warning: incompatible implicit declaration of built-in function 'strcpy' [enabled by default] readseq.c:219:3: warning: implicit declaration of function 'strcat' [-Wimplicit-function-declaration] readseq.c:219:3: warning: incompatible implicit declaration of built-in function 'strcat' [enabled by default] readseq.c:233:5: warning: array subscript has type 'char' [-Wchar-subscripts] readseq.c:252:7: warning: array subscript has type 'char' [-Wchar-subscripts] gcc -g -o genefeatures gfcode.o readseq.o -lm make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' make[1]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01' touch build-arch-stamp # Nothing to be done for indep - for now. #/usr/bin/make doc touch build-indep-stamp fakeroot debian/rules binary ln -sf bin.LINUX_4 bin touch configure-stamp # Add here commands to compile the arch part of the package. /usr/bin/make tools other make[1]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01' making makeUserPasswd for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aceversion.o aceversion.c ar rlu libfree.a aceversion.o gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c makeUserPasswd.c gcc -g -o makeUserPasswd makeUserPasswd.o -L. -lfree -lmd5 -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making acediff for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c acediff.c acediff.c: In function 'printFilePart': acediff.c:103:7: warning: unused variable 'c' [-Wunused-variable] gcc -g -o acediff acediff.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making acediffsorted for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c acediffsorted.c acediffsorted.c: In function 'oneLine_next_Object': acediffsorted.c:150:29: warning: variable 'isDNA' set but not used [-Wunused-but-set-variable] acediffsorted.c: In function 'processDiff': acediffsorted.c:367:18: warning: variable 'obCurrB' set but not used [-Wunused-but-set-variable] gcc -g -o acediffsorted acediffsorted.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making pmapace for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -o pmapace pmapace2.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making diskdump for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -o diskdump diskdump.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making diskfix for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -o diskfix diskfix.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making metacheck for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -o metacheck metadata.o -L. -lace -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 -lfl make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making homonym for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' make[2]: `homonym' is up to date. make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making tagcount for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c tagcount.c gcc -g -o tagcount tagcount.o -L. -lace -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 -lfl make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making blixem for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -o blixem blixem.o blxmain.o blxparser.o dotter.o dotterKarlin.o \ translate.o -L. -lgex -lgraph -lgd -lfree `../w3rdparty/acedb-config glib-2.0 gtk+-2.0` -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making blixelect for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' make[2]: `blixelect' is up to date. make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making dotter for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -o dotter dotter.o dotterKarlin.o dotterMain.o \ translate.o blxparser.o blixem.o -L. -lgex -lgraph -lgd -lfree `../w3rdparty/acedb-config glib-2.0 gtk+-2.0` -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making belvu for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -o belvu belvu.o \ -L. -lgex -lgraph -lgd -lfree `../w3rdparty/acedb-config glib-2.0 gtk+-2.0` -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making jade2ace for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c jade2ace.c gcc -g -o jade2ace jade2ace.o aceclientlib.o rpcace_clnt.o rpcace_xdr.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 chmod 755 jade2ace \rm -f netclient ln -s jade2ace netclient make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making efetch for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' make[2]: `efetch' is up to date. make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making gnbk for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -o gnbk gnbk.o gnbkserver.o rpcgnbk_sp.o rpcgnbk_xdr.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making gnbkclient for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' gcc -g -o gnbkclient gnbkclient.o gnbkclientlib.o rpcgnbk_clnt.o rpcgnbk_xdr.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' making genefeatures for LINUX_4 make[2]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' make[2]: `genefeatures' is up to date. make[2]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01/bin.LINUX_4' make[1]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01' touch build-arch-stamp dh_testdir dh_testroot dh_prep -s dh_installdirs -s if [ ! -d debian/tmp/usr/bin ]; then mkdir -p debian/tmp/usr/bin; fi cp -d `find bin/ -type f -a -executable` debian/tmp/usr/bin dh_install --autodest -s /usr/bin/make -f debian/rules DH_OPTIONS=-s binary-common make[1]: Entering directory `/tmp/buildd/acedb-4.9.39+dfsg.01' dh_testdir dh_testroot dh_installchangelogs dh_installdocs dh_installexamples dh_installmenu dh_installman dh_link dh_strip dh_compress dh_fixperms dh_makeshlibs dh_installdeb dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-dotter/usr/bin/dotter was not linked against libfontconfig.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-dotter/usr/bin/dotter was not linked against libatk-1.0.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-dotter/usr/bin/dotter was not linked against libgio-2.0.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-dotter/usr/bin/dotter was not linked against libgdk_pixbuf-2.0.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-dotter/usr/bin/dotter was not linked against libcairo.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-dotter/usr/bin/dotter was not linked against libpangocairo-1.0.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-dotter/usr/bin/dotter was not linked against libfreetype.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-dotter/usr/bin/dotter was not linked against libpangoft2-1.0.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-belvu/usr/bin/belvu was not linked against libfontconfig.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-belvu/usr/bin/belvu was not linked against libatk-1.0.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-belvu/usr/bin/belvu was not linked against libgio-2.0.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-belvu/usr/bin/belvu was not linked against libgdk_pixbuf-2.0.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-belvu/usr/bin/belvu was not linked against libcairo.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-belvu/usr/bin/belvu was not linked against libpangocairo-1.0.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-belvu/usr/bin/belvu was not linked against libfreetype.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/acedb-other-belvu/usr/bin/belvu was not linked against libpangoft2-1.0.so.0 (it uses none of the library's symbols) dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package `acedb-other-dotter' in `../acedb-other-dotter_4.9.39+dfsg.01-6_amd64.deb'. dpkg-deb: building package `acedb-other-belvu' in `../acedb-other-belvu_4.9.39+dfsg.01-6_amd64.deb'. dpkg-deb: building package `acedb-other' in `../acedb-other_4.9.39+dfsg.01-6_amd64.deb'. make[1]: Leaving directory `/tmp/buildd/acedb-4.9.39+dfsg.01' # Nothing to be done for indep - for now. #/usr/bin/make doc touch build-indep-stamp # Nothing to be done for indep - for now. #dh_testdir #dh_testroot #dh_prep -i #dh_installdirs -i #dh_install --autodest -i # Nothing to do for indep #/usr/bin/make -f debian/rules DH_OPTIONS=-i binary-common dpkg-genchanges >../acedb_4.9.39+dfsg.01-6_amd64.changes dpkg-genchanges: not including original source code in upload dpkg-source --after-build acedb-4.9.39+dfsg.01 dpkg-source: info: unapplying no-curses.patch dpkg-source: info: unapplying binutils-gold.patch dpkg-source: info: unapplying dotter_help.patch dpkg-source: info: unapplying efetch_help.patch dpkg-source: info: unapplying belvu_help.patch dpkg-source: info: unapplying blxview_gtk_namespace_conflict.patch dpkg-buildpackage: binary and diff upload (original source NOT included) I: Copying back the cached apt archive contents I: unmounting dev/pts filesystem I: unmounting run/shm filesystem I: unmounting proc filesystem I: cleaning the build env I: removing directory /var/cache/pbuilder/build//18764 and its subdirectories I: Current time: Tue Mar 26 10:37:32 CET 2013 I: pbuilder-time-stamp: 1364290652 Could not read the .changes file: /sw/debian-med/trunk/packages/acedb/build-area/. rm -rf /sw/debian-med/trunk/packages/acedb/build-area/acedb-4.9.39+dfsg.01